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tRNA copy number and codon usage in the sea cucumber genome provide insights into adaptive translation for saponin biosynthesis 期刊论文
OPEN BIOLOGY, 2021, 卷号: 11, 期号: 11, 页码: 16
Authors:  Liu, Chengzhang;  Yuan, Jianbo;  Zhang, Xiaojun;  Jin, Songjun;  Li, Fuhua;  Xiang, Jianhai
Adobe PDF(8509Kb)  |  Favorite  |  View/Download:16/0  |  Submit date:2022/01/05
tRNA  adaptive translation  saponin biosynthesis  cytochrome P450  UDP-glycosyltransferases  
Clustering genomic organization of sea cucumber miRNAs impacts their evolution and expression 期刊论文
GENOMICS, 2021, 卷号: 113, 期号: 6, 页码: 3544-3555
Authors:  Liu, Chengzhang;  Yuan, Jianbo;  Zhang, Xiaojun;  Jin, Songjun;  Li, Fuhua;  Xiang, Jianhai
Adobe PDF(4047Kb)  |  Favorite  |  View/Download:19/0  |  Submit date:2021/12/01
microRNA  miRNA cluster  Sea cucumber  Aestivation  Regeneration  
MiR-92 Family Members Form a Cluster Required for Notochord Tubulogenesis in Urochordate Ciona savignyi 期刊论文
GENES, 2021, 卷号: 12, 期号: 3, 页码: 15
Authors:  Yang, Libo;  Zhang, Xiaoming;  Liu, Chengzhang;  Zhang, Jin;  Dong, Bo
Adobe PDF(4950Kb)  |  Favorite  |  View/Download:38/0  |  Submit date:2021/05/11
miRNA cluster  miR-92  Ciona  notochord  lumen formation  
Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp 期刊论文
COMMUNICATIONS BIOLOGY, 2021, 卷号: 4, 期号: 1, 页码: 14
Authors:  Yuan, Jianbo;  Zhang, Xiaojun;  Wang, Min;  Sun, Yamin;  Liu, Chengzhang;  Li, Shihao;  Yu, Yang;  Gao, Yi;  Liu, Fei;  Zhang, Xiaoxi;  Kong, Jie;  Fan, Guangyi;  Zhang, Chengsong;  Feng, Lu;  Xiang, Jianhai;  Li, Fuhua
Adobe PDF(3687Kb)  |  Favorite  |  View/Download:48/0  |  Submit date:2021/04/21
Adaptation and molecular evidence for convergence in decapod crustaceans from deep-sea hydrothermal vent environments 期刊论文
MOLECULAR ECOLOGY, 2020, 页码: 16
Authors:  Yuan, Jianbo;  Zhang, Xiaojun;  Gao, Yi;  Zhang, Xiaoxi;  Liu, Chengzhang;  Xiang, Jianhai;  Li, Fuhua
Adobe PDF(947Kb)  |  Favorite  |  View/Download:42/0  |  Submit date:2021/04/12
adaptation  chemosynthesis  convergent evolution  deep-sea decapods  
Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vannamei 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 页码: 11
Authors:  Zhang, Xiaoxi;  Yuan, Jianbo;  Zhang, Xiaojun;  Liu, Chengzhang;  Xiang, Jianhai;  Li, Fuhua
Adobe PDF(2837Kb)  |  Favorite  |  View/Download:93/0  |  Submit date:2020/01/03
alternative splicing (AS)  stress response  Litopenaeus vannamei  RNA-seq  genome-wide identification  
Genome-Wide Identification and Expression Profiles of Myosin Genes in the Pacific White Shrimp, Litopenaeus vannamei 期刊论文
FRONTIERS IN PHYSIOLOGY, 2019, 卷号: 10, 页码: 12
Authors:  Zhang, Xiaoxi;  Yuan, Jianbo;  Zhang, Xiaojun;  Liu, Chengzhang;  Li, Fuhua;  Xiang, Jianhai
Adobe PDF(6722Kb)  |  Favorite  |  View/Download:106/0  |  Submit date:2019/07/11
myosin genes  muscle development  alternative splicing  penaeid shrimp  gene family  
Wnt Signaling Pathway Linked to Intestinal Regeneration via Evolutionary Patterns and Gene Expression in the Sea Cucumber Apostichopus japonicus 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 页码: 13
Authors:  Yuan, Jianbo;  Gao, Yi;  Sun, Lina;  Jin, Songjun;  Zhang, Xiaojun;  Liu, Chengzhang;  Li, Fuhua;  Xiang, Jianhai
Adobe PDF(7335Kb)  |  Favorite  |  View/Download:100/0  |  Submit date:2019/05/15
sea cucumber  intestinal regeneration  Wnt signaling pathway  positive selection  natural selection  
Penaeid shrimp genome provides insights into benthic adaptation and frequent molting 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 14
Authors:  Zhang, Xiaojun;  Yuan, Jianbo;  Sun, Yamin;  Li, Shihao;  Gao, Yi;  Yu, Yang;  Liu, Chengzhang;  Wang, Quanchao;  Lv, Xinjia;  Zhang, Xiaoxi;  Ma, Ka Yan;  Wang, Xiaobo;  Lin, Wenchao;  Wang, Long;  Zhu, Xueli;  Zhang, Chengsong;  Zhang, Jiquan;  Jin, Songjun;  Yu, Kuijie;  Kong, Jie;  Xu, Peng;  Chen, Jack;  Zhang, Hongbin;  Sorgeloos, Patrick;  Sagi, Amir;  Alcivar-Warren, Acacia;  Liu, Zhanjiang;  Wang, Lei;  Ruan, Jue;  Chu, Ka Hou;  Liu, Bin;  Li, Fuhua;  Xiang, Jianhai
Adobe PDF(3152Kb)  |  Favorite  |  View/Download:113/0  |  Submit date:2019/08/27
Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon 期刊论文
MARINE GENOMICS, 2018, 卷号: 39, 页码: 22-25
Authors:  Yuan, Jianbo;  Zhang, Xiaojun;  Liu, Chengzhang;  Yu, Yang;  Wei, Jiankai;  Li, Fuhua;  Xiang, Jianhai
Adobe PDF(250Kb)  |  Favorite  |  View/Download:88/0  |  Submit date:2019/08/21
Penaeid shrimps  Genome  Assembly  Annotation