RNA sequencing and LncRNA identification in muscle of the Pacific white shrimp <i>Litopenaeus vannamei</i> at different growth rates

doi:10.1016/j.aquaculture.2023.740534

IOCAS-IR > 实验海洋生物学重点实验室

	*RNA sequencing and LncRNA identification in muscle of the Pacific white shrimp Litopenaeus vannamei* at different growth rates**
	Zhong, Xiaoyun 1,2,3,4; Yu, Yang1,2,3,4 ; Zhang, Xiaojun 1,2,3,4; Zhang, Xiaoxi1,2 ; Si, Shuqing 1,2,3,4; Liu, Chengzhang 1,2,3; Yuan, Jianbo 1,2,3,4; Li, Fuhua 1,2,3,4
	2024-03-15
发表期刊	AQUACULTURE
ISSN	0044-8486
卷号	582 页码:13
通讯作者	Zhang, Xiaojun(xjzhang@qdio.ac.cn)
摘要	As a typical crustacean species, the growth of the Pacific white shrimp Litopenaeus vannamei has important economic and scientific value. Muscle growth in L. vannamei is regulated by a complex network of transcriptional and post-transcriptional processes. Although many genes have been found to be involved in shrimp muscle growth, their regulatory mechanisms remain largely unexplored. In this study, we compared gene expression differences in L. vannamei muscle with different growth rates, and identified a total of 2419 differentially expressed genes (DEGs). These DEGs were found to be associated with muscle growth, molting, epidermal structure, and immune and stress response. Furthermore, we discovered 9673 candidate lncRNAs in muscle, which showed distinct transcript characteristics compared to mRNAs. Among these, 1324 differentially expressed lncRNAs may affect muscle growth by regulating gene expression in cis- or trans-mode at the transcriptional level. For example, the lncRNA MSTRG.15718.1 was found to potentially affect muscle growth by regulating nearby genes. Our analyses enabled the discovery of novel genes and lncRNA regulatory networks that affect shrimp growth. These results not only provide new insights into the mechanism of shrimp muscle growth but also offer valuable clues for molecular breeding of shrimp growth traits.
关键词	Shrimp Litopenaeus vannamei Muscle Growth Transcriptome lncRNA
DOI	10.1016/j.aquaculture.2023.740534
收录类别	SCI
语种	英语
资助项目	National Key Research and Development Program of China[2022YFF1000304] ; National Natural Sciences Foundation of China[31972782] ; National Natural Sciences Foundation of China[32273102] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA24030105] ; Taishan Scholars Program ; Oceanographic Data Center, IOCAS
WOS研究方向	Fisheries ; Marine & Freshwater Biology
WOS类目	Fisheries ; Marine & Freshwater Biology
WOS记录号	WOS:001163999000001
出版者	ELSEVIER
WOS关键词	PENAEUS-MONODON ; SNP ANALYSIS ; GENES ; TRANSCRIPTOME
引用统计
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/184596
专题	实验海洋生物学重点实验室
通讯作者	Zhang, Xiaojun
作者单位	1.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, CAS, Qingdao 266071, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, Shandong Prov Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 3.Chinese Acad Sci, Key Lab Breeding Biotechnol & Sustainable Aquacult, Wuhan 430072, Peoples R China 4.Univ Chinese Acad Sci, Coll Earth Sci, Beijing 100049, Peoples R China
第一作者单位	中国科学院海洋研究所
通讯作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Zhong, Xiaoyun,Yu, Yang,Zhang, Xiaojun,et al. RNA sequencing and LncRNA identification in muscle of the Pacific white shrimp Litopenaeus vannamei at different growth rates[J]. AQUACULTURE,2024,582:13.
APA	Zhong, Xiaoyun.,Yu, Yang.,Zhang, Xiaojun.,Zhang, Xiaoxi.,Si, Shuqing.,...&Li, Fuhua.(2024).RNA sequencing and LncRNA identification in muscle of the Pacific white shrimp Litopenaeus vannamei at different growth rates.AQUACULTURE,582,13.
MLA	Zhong, Xiaoyun,et al."RNA sequencing and LncRNA identification in muscle of the Pacific white shrimp Litopenaeus vannamei at different growth rates".AQUACULTURE 582(2024):13.