itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files

doi:10.1093/bioinformatics/btad339

	itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files
	Zhou, Tong 1,2,3; Xu, Kuidong1,2,3 ; Zhao, Feng 1,2,3; Liu, Weiyue 1,3; Li, Longzhao 1,3; Hua, Zhongyi 4; Zhou, Xin 5
	2023-06-01
发表期刊	BIOINFORMATICS
ISSN	1367-4803
卷号	39 期号:6 页码:4
通讯作者	Xu, Kuidong(kxu@qdio.ac.cn)
摘要	iTOL is a powerful and comprehensive phylogenetic tree visualization engine. However, adjusting to new templates can be time-consuming, especially when many templates are available. We developed an R package namely itol.toolkit to help users generate all 23 types of annotation files in iTOL. This R package also provides an all-in-one data structure to store data and themes, accelerating the step from metadata to annotation files of iTOL visualizations through automatic workflows.
DOI	10.1093/bioinformatics/btad339
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China[41930533] ; National Natural Science Foundation of China[41876171] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB42000000] ; Youth Innovation Promotion Association CAS[2022206]
WOS研究方向	Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics
WOS类目	Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Computer Science, Interdisciplinary Applications ; Mathematical & Computational Biology ; Statistics & Probability
WOS记录号	WOS:001004164400010
出版者	OXFORD UNIV PRESS
WOS关键词	REPRODUCIBILITY
引用统计	被引频次：4[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/182455
专题	海洋生物分类与系统演化实验室实验海洋生物学重点实验室
通讯作者	Xu, Kuidong
作者单位	1.Chinese Acad Sci, Inst Oceanol, Lab Marine Organism Taxon & Phylogeny, Qingdao Key Lab Marine Biodivers & Conservat, Qingdao 266071, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100700, Peoples R China 4.China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, Beijing 100700, Peoples R China 5.Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing 100101, Peoples R China
第一作者单位	中国科学院海洋研究所
通讯作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Zhou, Tong,Xu, Kuidong,Zhao, Feng,et al. itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files[J]. BIOINFORMATICS,2023,39(6):4.
APA	Zhou, Tong.,Xu, Kuidong.,Zhao, Feng.,Liu, Weiyue.,Li, Longzhao.,...&Zhou, Xin.(2023).itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files.BIOINFORMATICS,39(6),4.
MLA	Zhou, Tong,et al."itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files".BIOINFORMATICS 39.6(2023):4.