Knowledge Management System Of Institute of Oceanology, Chinese Academy of Sciences
| Vibrio profundi sp. nov., isolated from a deep-sea seamount | |
| Zhang, Nai-Xing1,2; Zhang, De-Chao3,4,5; Qiao, Neng-Hu4,6 | |
| 2019-11-01 | |
| Source Publication | ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
 |
| ISSN | 0003-6072 |
| Volume | 112Issue:11Pages:1603-1610 |
| Corresponding Author | Zhang, De-Chao(zhangdechao@qdio.ac.cn) |
| Abstract | A Gram-stain negative, rod-shaped, facultative anaerobic, motile bacterial strain, designated TP187(T), was isolated from a seamount near the Yap Trench in the tropical western Pacific. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain TP187(T) is related to members of the genus Vibrio and has high 16S rRNA gene sequence similarity with the type strains of Vibrio chagasii (97.3%) and Vibrio gallaecicus (97.1%). Sequence similarities to all other type strains of current species of the genus Vibrio were below 97%. The polar lipids profile was found to contain diphosphatidylglycerol, phosphatidylglycerol, an aminophospholipid, two aminolipids, four phospholipids and eleven unidentified polar lipids. Ubiquinone Q-8 was detected as the predominant quinone. The genomic DNA G + C content of strain TP187(T) was determined to be 43.7 mol%. In addition, the maximum values of in silico DNA-DNA hybridization (isDDH) and average nucleotide identity (ANI) between strain TP187(T) with V. chagasii LMG 21353(T) were 22.40 and 77.50% respectively. Both values are below the proposed cutoff levels for species delineation, i.e. 70 and 95%, respectively. Combined data from phenotypic, phylogenetic, isDDH and ANI data demonstrated that the strain TP187(T) is representative of a novel species of the genus Vibrio, for which we propose the name Vibrio profundi sp. nov. (type strain TP187(T) = KACC 18555(T) = CGMCC 1.15395(T)). |
| Keyword | Vibrio Coral Seamount |
| DOI | 10.1007/s10482-019-01286-4 |
| Indexed By | SCI |
| Language | 英语 |
| Funding Project | Senior User Project of RV KEXUE[KEXUE2019G09] ; Science & Technology Basic Resources Investigation Program of China[2017FY100804] ; Shandong Provincial Key Laboratory of Marine Ecological Environment and Disaster Prevention and Mitigation[201802] |
| WOS Research Area | Microbiology |
| WOS Subject | Microbiology |
| WOS ID | WOS:000491066900003 |
| Publisher | SPRINGER |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.qdio.ac.cn/handle/337002/163242 |
| Collection | 中国科学院海洋研究所 |
| Corresponding Author | Zhang, De-Chao |
| Affiliation | 1.Shandong Prov Key Lab Marine Ecol Environm & Disa, Qingdao 266033, Shandong, Peoples R China 2.SOA, North China Sea Forecast Ctr, Qingdao 266033, Shandong, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Shandong, Peoples R China 4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 5.Chinese Acad Sci, Ctr Ocean Mega Sci, 7 Nanhai Rd, Qingdao 266071, Shandong, Peoples R China 6.Chinese Acad Sci, State Key Lab Urban & Reg Ecol, Res Ctr Ecoenvironm Sci, Beijing 100085, Peoples R China |
| Corresponding Author Affilication | Institute of Oceanology, Chinese Academy of Sciences |
| Recommended Citation GB/T 7714 | Zhang, Nai-Xing,Zhang, De-Chao,Qiao, Neng-Hu. Vibrio profundi sp. nov., isolated from a deep-sea seamount[J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,2019,112(11):1603-1610. |
| APA | Zhang, Nai-Xing,Zhang, De-Chao,&Qiao, Neng-Hu.(2019).Vibrio profundi sp. nov., isolated from a deep-sea seamount.ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,112(11),1603-1610. |
| MLA | Zhang, Nai-Xing,et al."Vibrio profundi sp. nov., isolated from a deep-sea seamount".ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY 112.11(2019):1603-1610. |
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