High-Throughput Identification of Antimicrobial Peptides from Amphibious Mudskippers

doi:10.3390/md15110364

IOCAS-IR > 实验海洋生物学重点实验室

	High-Throughput Identification of Antimicrobial Peptides from Amphibious Mudskippers
	Yi, Yunhai 1,2; You, Xinxin 2; Bian, Chao 2; Chen, Shixi 3,4; Lv, Zhao 5; Qiu, Limei 5; Shi, Qiong 1,2,6
	2017-11-01
发表期刊	MARINE DRUGS
ISSN	1660-3397
卷号	15 期号:11 页码:18
通讯作者	Shi, Qiong(shiqiong@genomics.cn)
摘要	Widespread existence of antimicrobial peptides (AMPs) has been reported in various animals with comprehensive biological activities, which is consistent with the important roles of AMPs as the first line of host defense system. However, no big-data-based analysis on AMPs from any fish species is available. In this study, we identified 507 AMP transcripts on the basis of our previously reported genomes and transcriptomes of two representative amphibious mudskippers, Boleophthalmus pectinirostris (BP) and Periophthalmus magnuspinnatus (PM). The former is predominantly aquatic with less time out of water, while the latter is primarily terrestrial with extended periods of time on land. Within these identified AMPs, 449 sequences are novel; 15 were reported in BP previously; 48 are identically overlapped between BP and PM; 94 were validated by mass spectrometry. Moreover, most AMPs presented differential tissue transcription patterns in the two mudskippers. Interestingly, we discovered two AMPs, hemoglobin 1 and amylin, with high inhibitions on Micrococcus luteus. In conclusion, our high-throughput screening strategy based on genomic and transcriptomic data opens an efficient pathway to discover new antimicrobial peptides for ongoing development of marine drugs.
关键词	antimicrobial peptide (AMP) high-throughput identification amphibious mudskipper antimicrobial activity
DOI	10.3390/md15110364
收录类别	SCI
语种	英语
资助项目	Shenzhen Special Program for Development of Emerging Strategic Industries[JSGG20170412153411369] ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Shenzhen Special Program for Development of Emerging Strategic Industries[JSGG20170412153411369] ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship ; Shenzhen Special Program for Development of Emerging Strategic Industries[JSGG20170412153411369] ; Zhenjiang Leading Talent Program for Innovation and Entrepreneurship
WOS研究方向	Pharmacology & Pharmacy
WOS类目	Chemistry, Medicinal
WOS记录号	WOS:000416600200034
出版者	MDPI AG
引用统计	被引频次：21[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/157300
专题	实验海洋生物学重点实验室
通讯作者	Shi, Qiong
作者单位	1.Univ Chinese Acad Sci, IBGI Educ Ctr, Shenzhen 518083, Peoples R China 2.BGI, Shenzhen Key Lab Marine Gen, Guangdong Prov Key Lab Mol Breeding Marine Econ A, BGI Acad Marine Sci,BGI Marine, Shenzhen 518083, Peoples R China 3.Xiamen Univ, Coll Ocean & Earth Sci, State Key Lab Marine Environm Sci, Xiamen 361102, Peoples R China 4.Xiamen Univ, Fujian Collaborat Innovat Ctr Exploitat & Utiliza, Xiamen 361102, Peoples R China 5.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 6.Shenzhen Univ, Coll Life Sci & Oceanog, Lab Aquat Genom, Shenzhen 518060, Peoples R China
推荐引用方式 GB/T 7714	Yi, Yunhai,You, Xinxin,Bian, Chao,et al. High-Throughput Identification of Antimicrobial Peptides from Amphibious Mudskippers[J]. MARINE DRUGS,2017,15(11):18.
APA	Yi, Yunhai.,You, Xinxin.,Bian, Chao.,Chen, Shixi.,Lv, Zhao.,...&Shi, Qiong.(2017).High-Throughput Identification of Antimicrobial Peptides from Amphibious Mudskippers.MARINE DRUGS,15(11),18.
MLA	Yi, Yunhai,et al."High-Throughput Identification of Antimicrobial Peptides from Amphibious Mudskippers".MARINE DRUGS 15.11(2017):18.