Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade

doi:10.1016/j.bse.2015.11.019

IOCAS-IR > 实验海洋生物学重点实验室

	Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade
	Yuan, Jianbo; Zhang, Xiaojun; Liu, Chengzhang; Sun, Xiaoqing; Sivaramasamy, Elayaraja; Li, Fuhua; Xiang, Jianhai
	2016-02-01
发表期刊	BIOCHEMICAL SYSTEMATICS AND ECOLOGY
卷号	64 页码:111-121
文章类型	Article
摘要	A reference genome is important for genomic and phylogenomic analysis, but except for a brachiopod Daphnia pulex, other crustacean genomes have not been completely sequenced. As one of the most economically important crustaceans, decapod shrimps have attracted great attentions worldwide. But the highly complexity block us from completing shrimp genomes. To explore the decapod shrimp genomes, we performed phylogenomic and comparative genomics analyses of pancrustaceans using transcriptome data. A group of 85 single-copy genes were collected from two shrimps and seven genome-available arthropods for phylogenetic analysis. It was found that the two major members of Pancrustacea, Hexapoda and Crustacea, fall into respective monophyletic clades. D. pulex and shrimps were estimated divergent at about 395 Myr and the gene family compositions were significantly different between them. The gene families involved in ion binding, peroxidase activity and cytoskeletal part were significantly expanded in shrimps, which were considered tightly associated with the seawater environment adaptation. When comparing the two shrimps, gene families involved in synapse in Litopenaeus vannamei and cellular component in Penaeus monodon showed significant expansion, which implies the nervous system of L. vannamei and cellular structure of P. monodon might be adaptively evolved respectively. (C) 2015 Elsevier Ltd. All rights reserved.
关键词	Shrimp Pancrustacea Crustacea Divergence Time Gene Family
DOI	10.1016/j.bse.2015.11.019
收录类别	SCI
语种	英语
WOS记录号	WOS:000370891300017
引用统计	被引频次：4[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/112486
专题	实验海洋生物学重点实验室
作者单位	Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China
第一作者单位	实验海洋生物学重点实验室
推荐引用方式 GB/T 7714	Yuan, Jianbo,Zhang, Xiaojun,Liu, Chengzhang,et al. Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade[J]. BIOCHEMICAL SYSTEMATICS AND ECOLOGY,2016,64:111-121.
APA	Yuan, Jianbo.,Zhang, Xiaojun.,Liu, Chengzhang.,Sun, Xiaoqing.,Sivaramasamy, Elayaraja.,...&Xiang, Jianhai.(2016).Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade.BIOCHEMICAL SYSTEMATICS AND ECOLOGY,64,111-121.
MLA	Yuan, Jianbo,et al."Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade".BIOCHEMICAL SYSTEMATICS AND ECOLOGY 64(2016):111-121.

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