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MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes
Sun, Zheng1,2; Cheng, Yuanzhi2; Zhang, Junbin1
2015
发表期刊EVOLUTIONARY BIOINFORMATICS
卷号11
文章类型Article
摘要As a result of the development of rapid and efficient sequencing technologies, complete sequences of numerous mitochondrial genomes are now available. Mitochondrial genomes have been widely used to evaluate relationships between species in several fields, including evolutionary and population genetics, as well as in forensic identification and in the study of mitochondrial diseases in humans. However, the creation of mitochondrial genomes is extremely time consuming. In this paper, we present a new tool, MITOSCISSOR, which is a rapid method for parsing and formatting dozens of complete mitochondrial genome sequences. With the aid of MITOSCISSOR, complete mitochondrial genome sequences of 103 species from Tetraodontiformes (a difficult-to-classify order of fish) were easily parsed and formatted. It typically takes several days to produce similar results when relying upon manual editing. This tool could open the .gb file of Genbank directly and help us to use existing mitogenomic data. In the present study, we established the first clear and robust molecular phylogeny of 103 tetraodontiform fishes, a goal that has long eluded ichthyologists. MITOSCISSOR greatly increases the efficiency with which DNA data files can be parsed and annotated, and thus has the potential to greatly facilitate evolutionary analysis using mitogenomic data. This software is freely available for noncommercial users at http://www.filedropper.com/mitoscissor.
关键词Mitochondrial Genome Evolution Perl Script Phylogeny
DOI10.4137/EBO.S22340
收录类别SCI
语种英语
WOS记录号WOS:000356093800001
引用统计
被引频次:1[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.qdio.ac.cn/handle/337002/33068
专题实验海洋生物学重点实验室
作者单位1.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China
2.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China
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GB/T 7714
Sun, Zheng,Cheng, Yuanzhi,Zhang, Junbin. MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes[J]. EVOLUTIONARY BIOINFORMATICS,2015,11.
APA Sun, Zheng,Cheng, Yuanzhi,&Zhang, Junbin.(2015).MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes.EVOLUTIONARY BIOINFORMATICS,11.
MLA Sun, Zheng,et al."MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes".EVOLUTIONARY BIOINFORMATICS 11(2015).
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