Institutional Repository of Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes | |
Sun, Zheng1,2; Cheng, Yuanzhi2; Zhang, Junbin1 | |
2015 | |
发表期刊 | EVOLUTIONARY BIOINFORMATICS |
卷号 | 11 |
文章类型 | Article |
摘要 | As a result of the development of rapid and efficient sequencing technologies, complete sequences of numerous mitochondrial genomes are now available. Mitochondrial genomes have been widely used to evaluate relationships between species in several fields, including evolutionary and population genetics, as well as in forensic identification and in the study of mitochondrial diseases in humans. However, the creation of mitochondrial genomes is extremely time consuming. In this paper, we present a new tool, MITOSCISSOR, which is a rapid method for parsing and formatting dozens of complete mitochondrial genome sequences. With the aid of MITOSCISSOR, complete mitochondrial genome sequences of 103 species from Tetraodontiformes (a difficult-to-classify order of fish) were easily parsed and formatted. It typically takes several days to produce similar results when relying upon manual editing. This tool could open the .gb file of Genbank directly and help us to use existing mitogenomic data. In the present study, we established the first clear and robust molecular phylogeny of 103 tetraodontiform fishes, a goal that has long eluded ichthyologists. MITOSCISSOR greatly increases the efficiency with which DNA data files can be parsed and annotated, and thus has the potential to greatly facilitate evolutionary analysis using mitogenomic data. This software is freely available for noncommercial users at http://www.filedropper.com/mitoscissor. |
关键词 | Mitochondrial Genome Evolution Perl Script Phylogeny |
DOI | 10.4137/EBO.S22340 |
收录类别 | SCI |
语种 | 英语 |
WOS记录号 | WOS:000356093800001 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.qdio.ac.cn/handle/337002/33068 |
专题 | 实验海洋生物学重点实验室 |
作者单位 | 1.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China |
第一作者单位 | 中国科学院海洋研究所 |
推荐引用方式 GB/T 7714 | Sun, Zheng,Cheng, Yuanzhi,Zhang, Junbin. MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes[J]. EVOLUTIONARY BIOINFORMATICS,2015,11. |
APA | Sun, Zheng,Cheng, Yuanzhi,&Zhang, Junbin.(2015).MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes.EVOLUTIONARY BIOINFORMATICS,11. |
MLA | Sun, Zheng,et al."MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes".EVOLUTIONARY BIOINFORMATICS 11(2015). |
条目包含的文件 | ||||||
文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
MITOSCISSOR_ A Usefu(2913KB) | 期刊论文 | 出版稿 | 限制开放 | ODC PDDL | 浏览 |
除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。
修改评论