IOCAS-IR  > 实验海洋生物学重点实验室
MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes
Sun, Zheng1,2; Cheng, Yuanzhi2; Zhang, Junbin1
2015
Source PublicationEVOLUTIONARY BIOINFORMATICS
Volume11
SubtypeArticle
AbstractAs a result of the development of rapid and efficient sequencing technologies, complete sequences of numerous mitochondrial genomes are now available. Mitochondrial genomes have been widely used to evaluate relationships between species in several fields, including evolutionary and population genetics, as well as in forensic identification and in the study of mitochondrial diseases in humans. However, the creation of mitochondrial genomes is extremely time consuming. In this paper, we present a new tool, MITOSCISSOR, which is a rapid method for parsing and formatting dozens of complete mitochondrial genome sequences. With the aid of MITOSCISSOR, complete mitochondrial genome sequences of 103 species from Tetraodontiformes (a difficult-to-classify order of fish) were easily parsed and formatted. It typically takes several days to produce similar results when relying upon manual editing. This tool could open the .gb file of Genbank directly and help us to use existing mitogenomic data. In the present study, we established the first clear and robust molecular phylogeny of 103 tetraodontiform fishes, a goal that has long eluded ichthyologists. MITOSCISSOR greatly increases the efficiency with which DNA data files can be parsed and annotated, and thus has the potential to greatly facilitate evolutionary analysis using mitogenomic data. This software is freely available for noncommercial users at http://www.filedropper.com/mitoscissor.
KeywordMitochondrial Genome Evolution Perl Script Phylogeny
DOI10.4137/EBO.S22340
Indexed BySCI
Language英语
WOS IDWOS:000356093800001
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/33068
Collection实验海洋生物学重点实验室
Affiliation1.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China
2.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Sun, Zheng,Cheng, Yuanzhi,Zhang, Junbin. MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes[J]. EVOLUTIONARY BIOINFORMATICS,2015,11.
APA Sun, Zheng,Cheng, Yuanzhi,&Zhang, Junbin.(2015).MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes.EVOLUTIONARY BIOINFORMATICS,11.
MLA Sun, Zheng,et al."MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes".EVOLUTIONARY BIOINFORMATICS 11(2015).
Files in This Item:
File Name/Size DocType Version Access License
MITOSCISSOR_ A Usefu(2913KB)期刊论文出版稿开放获取ODC PDDLView Application Full Text
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Sun, Zheng]'s Articles
[Cheng, Yuanzhi]'s Articles
[Zhang, Junbin]'s Articles
Baidu academic
Similar articles in Baidu academic
[Sun, Zheng]'s Articles
[Cheng, Yuanzhi]'s Articles
[Zhang, Junbin]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Sun, Zheng]'s Articles
[Cheng, Yuanzhi]'s Articles
[Zhang, Junbin]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: MITOSCISSOR_ A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes.pdf
Format: Adobe PDF
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.