| The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales | |
| Gao, Dahai1,2; Sun, Zhongmin3,4; Bi, Guiqi5; Zhang, Xue6,7 | |
| 2022-12-01 | |
| 发表期刊 | AQUATIC BOTANY
 |
| ISSN | 0304-3770 |
| 卷号 | 183页码:8 |
| 通讯作者 | Sun, Zhongmin(zhmsun@hotmail.com) |
| 摘要 | In the present study, the whole chloroplast (cp) genome of B. marginata was characterized for the first time and genomic features were comparatively analyzed with six relative species in Ulvales. The cp genome of B. marginata was 170, 562 bp in length, exhibiting similar general structure but different in GC content from Ulva and Pseudendoclonium. A total of 113 unique genes were annotated, including 84 protein-coding genes, 26 tRNA and 3 rRNA. A higher level of rearrangements and small syntenic blocks exists comparing the locally collinear blocks. Codon usage analysis identified 30 biased codons with A or U-ended. Sequence analysis detected a total of 23 forward repeats, 18 palindrome repeats, 8 reverse repeats and 38 SSRs with different types. The phylogenetic analyses based on the entire cp genome suggested that Blidingia is closer to Ulva than to Pseudendoclonium. The entire cp genome of Blidingia provides a valuable resource for further studies. |
| 关键词 | Blidingia marginata Chlorophyta Chloroplast genome Comparative genomics Phylogenetic analysis |
| DOI | 10.1016/j.aquabot.2022.103568 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | Strategic Priority Research Pro- gram of the Chinese Academy of Sciences[XDA23050304] |
| WOS研究方向 | Plant Sciences ; Marine & Freshwater Biology |
| WOS类目 | Plant Sciences ; Marine & Freshwater Biology |
| WOS记录号 | WOS:000861158500001 |
| 出版者 | ELSEVIER |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/180736 |
| 专题 | 海洋生物分类与系统演化实验室 |
| 通讯作者 | Sun, Zhongmin |
| 作者单位 | 1.Shanghai Ocean Univ, Key Lab Explorat & Utilizat Aquat Genet Resources, Minist Educ, Shanghai 201306, Peoples R China 2.Shanghai Ocean Univ, Shanghai Aquaculture Engn Technol Res Ctr, Shanghai 201306, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Dept Marine Organism Taxon & Phylogeny, Qingdao 266071, Peoples R China 4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China 5.Chinese Acad Agr Sci AGIS, Agr Genomes Inst Shenzhen, Shenzhen 518120, Peoples R China 6.Tianjin Bohai Sea Fisheries Res Inst, Tianjin 300457, Peoples R China 7.Tianjin Marine Ranching Tech Engn Ctr, Tianjin 300457, Peoples R China |
| 通讯作者单位 | 中国科学院海洋研究所 |
| 推荐引用方式 GB/T 7714 | Gao, Dahai,Sun, Zhongmin,Bi, Guiqi,et al. The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales[J]. AQUATIC BOTANY,2022,183:8. |
| APA | Gao, Dahai,Sun, Zhongmin,Bi, Guiqi,&Zhang, Xue.(2022).The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales.AQUATIC BOTANY,183,8. |
| MLA | Gao, Dahai,et al."The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales".AQUATIC BOTANY 183(2022):8. |
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| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| 1-s2.0-S030437702200（5082KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
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