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Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity
Li, Ao1,2,3; Dai, He4; Guo, Ximing5; Zhang, Ziyan1,2,6,7; Zhang, Kexin1,2,6,7; Wang, Chaogang1,2,6,7; Wang, Xinxing1,2,6,7; Wang, Wei1,2,6,8; Chen, Hongju4; Li, Xumin4; Zheng, Hongkun4; Li, Li1,2,6,7,8; Zhang, Guofan1,2,3,8
2021-11-12
Source PublicationCOMMUNICATIONS BIOLOGY
Volume4Issue:1Pages:12
Corresponding AuthorLi, Li(lili@qdio.ac.cn) ; Zhang, Guofan(gzhang@qdio.ac.cn)
AbstractUnderstanding the roles of genetic divergence and phenotypic plasticity in adaptation is central to evolutionary biology and important for assessing adaptive potential of species under climate change. Analysis of a chromosome-level assembly and resequencing of individuals across wide latitude distribution in the estuarine oyster (Crassostrea ariakensis) revealed unexpectedly low genomic diversity and population structures shaped by historical glaciation, geological events and oceanographic forces. Strong selection signals were detected in genes responding to temperature and salinity stress, especially of the expanded solute carrier families, highlighting the importance of gene expansion in environmental adaptation. Genes exhibiting high plasticity showed strong selection in upstream regulatory regions that modulate transcription, indicating selection favoring plasticity. Our findings suggest that genomic variation and population structure in marine bivalves are heavily influenced by climate history and physical forces, and gene expansion and selection may enhance phenotypic plasticity that is critical for the adaptation to rapidly changing environments. Ao Li, He Dai, and Ximing Guo et al. present a high-quality genome from the estuarine oyster, Crassostrea ariakensis. They highlight the climate impact on population divergence, a suite of genes likely important for adaptation to environments of different temperatures and salinities, and provide further insight into the evolution of this species.
DOI10.1038/s42003-021-02823-6
Indexed BySCI
Language英语
Funding ProjectStrategic Priority Research Program of the Chinese Academy of Sciences[XDA23050402] ; National Key R&D Program of China[2018YFD0900304] ; National Natural Science Foundation of China[32101353] ; China Postdoctoral Science Foundation[2019TQ0324] ; Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Sciences[COMS2019Q06] ; Distinguished Young Scientists Research Fund of Key Laboratory of Experimental Marine Biology, Chinese Academy of Sciences[KLEMBDYS04] ; Technology and the Modern Agro-industry Technology Research System[CARS-49]
WOS Research AreaLife Sciences & Biomedicine - Other Topics ; Science & Technology - Other Topics
WOS SubjectBiology ; Multidisciplinary Sciences
WOS IDWOS:000718004600009
PublisherNATURE PORTFOLIO
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/177222
Collection实验海洋生物学重点实验室
海洋生态与环境科学重点实验室
Corresponding AuthorLi, Li; Zhang, Guofan
Affiliation1.Chinese Acad Sci, Qingdao, Peoples R China
2.Chinese Acad Sci, Ctr Ocean Megasci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao, Peoples R China
3.Pilot Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China
4.Biomarker Technol Corp, Beijing, Peoples R China
5.Rutgers State Univ, Dept Marine & Coastal Sci, Haskin Shellfish Res Lab, Port Norris, NJ USA
6.Pilot Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao, Peoples R China
7.Univ Chinese Acad Sci, Beijing, Peoples R China
8.Chinese Acad Sci, Inst Oceanol, Natl & Local Joint Engn Key Lab Ecol Mariculture, Qingdao, Peoples R China
First Author AffilicationCenter for Ocean Mega-Science, Chinese Academy of Sciences
Corresponding Author AffilicationCenter for Ocean Mega-Science, Chinese Academy of Sciences;  Institute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Li, Ao,Dai, He,Guo, Ximing,et al. Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity[J]. COMMUNICATIONS BIOLOGY,2021,4(1):12.
APA Li, Ao.,Dai, He.,Guo, Ximing.,Zhang, Ziyan.,Zhang, Kexin.,...&Zhang, Guofan.(2021).Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity.COMMUNICATIONS BIOLOGY,4(1),12.
MLA Li, Ao,et al."Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity".COMMUNICATIONS BIOLOGY 4.1(2021):12.
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