Construction of genetic map and QTL analysis of carotenoid-related trait based on EST markers in noble scallop Chlamys nobilis

doi:10.1016/j.aquaculture.2021.736775

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	Construction of genetic map and QTL analysis of carotenoid-related trait based on EST markers in noble scallop Chlamys nobilis
	Ye, Ting 1,2,3; Meng, Fang 1,2,3; Tan, Karsoon 1,2,3; Li, Li 4; Zhang, Guofan 4; Zheng, Huaiping 1,2,3
	2021-08-30
发表期刊	AQUACULTURE
ISSN	0044-8486
卷号	541 页码:9
通讯作者	Zheng, Huaiping(hpzheng@stu.edu.cn)
摘要	Carotenoid is an important economic trait for genetic and breeding in animals and plants. The noble scallop Chlamys nobilis is an important aquaculture bivalve in southern China. Studies in the noble scallop have shown that carotenoids content among individuals in their muscle are varies. In order to explain the variation, a genetic map was constructed in this study using F2 progenies with different carotenoids content, and then QTLs for carotenoids content in adductor and mantle were analyzed. Totally, 225 polymorphic markers (170 SNPs, 32 InDels and 23 SSRs) were developed from expressed sequence tags (ESTs). The female map had 16 linkage groups and spanned 595.2 cM with an average interval of 6.7 cM, and the male map had 19 linkage groups and spanned 745.7 cM with an average interval of 7.2 cM. However, the integrated map only contained 14 linkage groups, spanning 691.2 cM and with an average interval of 4.8 cM. A total of five QTLs were identified including three in the adductor and two in the mantle, which were distributed in linkage group 1 (Z1), 5 (Z5) and 12 (Z12), respectively. In addition, two QTLs on Z12 completely overlapped, which explained 28.0% in the adductor and 55.6% in the mantle of phenotypic variation, respectively, suggesting the presence of important carotenoiddetermining genes in this region. The present study was the first to construct a genetic map using animals with different carotenoids content and identified five QTLs for carotenoids content, which can provide new insights for further understanding genetic mechanism of carotenoids deposition.
关键词	Noble scallop Chlamys nobilis Carotenoid Genetic map QTL
DOI	10.1016/j.aquaculture.2021.736775
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China[31872563] ; China Modern Agroindustry Technology Research System[CARS-49]
WOS研究方向	Fisheries ; Marine & Freshwater Biology
WOS类目	Fisheries ; Marine & Freshwater Biology
WOS记录号	WOS:000657606700006
出版者	ELSEVIER
引用统计	被引频次：2[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/176829
专题	中国科学院海洋研究所
通讯作者	Zheng, Huaiping
作者单位	1.Shantou Univ, Statute Marine Sci, Key Lab Marine Biotechnol Guangdong Prov, Shantou 515063, Peoples R China 2.Mariculture Res Ctr Subtrop Shellfish & Algae Gua, Shantou 515063, Peoples R China 3.Shantou Univ, STU UMT Joint Shellfish Res Lab, Shantou 515063, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China
推荐引用方式 GB/T 7714	Ye, Ting,Meng, Fang,Tan, Karsoon,et al. Construction of genetic map and QTL analysis of carotenoid-related trait based on EST markers in noble scallop Chlamys nobilis[J]. AQUACULTURE,2021,541:9.
APA	Ye, Ting,Meng, Fang,Tan, Karsoon,Li, Li,Zhang, Guofan,&Zheng, Huaiping.(2021).Construction of genetic map and QTL analysis of carotenoid-related trait based on EST markers in noble scallop Chlamys nobilis.AQUACULTURE,541,9.
MLA	Ye, Ting,et al."Construction of genetic map and QTL analysis of carotenoid-related trait based on EST markers in noble scallop Chlamys nobilis".AQUACULTURE 541(2021):9.

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