Institutional Repository of Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
| The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation | |
Cui, Zhaoxia1,2,3; Liu, Yuan2,3,4; Yuan, Jianbo2,3,4; Zhang, Xiaojun2,3,4; Ventura, Tomer5; Ma, Ka Yan6; Sun, Shuai7; Song, Chengwen2 ; Zhan, Dongliang8; Yang, Yanan1; Liu, Hourong2; Fan, Guangyi7; Cai, Qingle8; Du, Jing2; Qin, Jing6,9; Shi, Chengcheng7; Hao, Shijie7; Fitzgibbon, Quinn P.10; Smith, Gregory G.10; Xiang, Jianhai2,3,4; Chan, Tin-Yam11,12; Hui, Min2,3,4; Bao, Chenchang1; Li, Fuhua2,3,4; Chu, Ka Hou6
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| 2021-04-22 | |
| Source Publication | NATURE COMMUNICATIONS
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| ISSN | 2041-1723 |
| Volume | 12Issue:1Pages:13 |
| Corresponding Author | Cui, Zhaoxia(cuizhaoxia@nbu.edu.cn) ; Li, Fuhua(fhli@qdio.ac.cn) ; Chu, Ka Hou(kahouchu@cuhk.edu.hk) |
| Abstract | Brachyurans, or crabs, are of commercial and ecological importance, but limited genomic resources exist. Here the authors present a chromosome-level genome and expression data for the Chinese mitten crab, to shed light on the biology of this group. The infraorder Brachyura (true or short-tailed crabs) represents a successful group of marine invertebrates yet with limited genomic resources. Here we report a chromosome-anchored reference genome and transcriptomes of the Chinese mitten crab Eriocheir sinensis, a catadromous crab and invasive species with wide environmental tolerance, strong osmoregulatory capacity and high fertility. We show the expansion of specific gene families in the crab, including F-ATPase, which enhances our knowledge on the adaptive plasticity of this successful invasive species. Our analysis of spatio-temporal transcriptomes and the genome of E. sinensis and other decapods shows that brachyurization development is associated with down-regulation of Hox genes at the megalopa stage when tail shortening occurs. A better understanding of the molecular mechanism regulating sexual development is achieved by integrated analysis of multiple omics. These genomic resources significantly expand the gene repertoire of Brachyura, and provide insights into the biology of this group, and Crustacea in general. |
| DOI | 10.1038/s41467-021-22604-3 |
| Indexed By | SCI |
| Language | 英语 |
| Funding Project | National Key R&D Program of China[2018YFD0900303] ; National Natural Science Foundation of China[32072964] ; Ten Thousand Talents Program ; Scientific and Technological Innovation Project of Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02] ; Collaborative Research Fund from the Research Grants Council, Hong Kong Special Administrative Region, China[C4042-14G] ; Ministry of Science and Technology, Taiwan ; Center of Excellence for the Oceans, National Taiwan Ocean University |
| WOS Research Area | Science & Technology - Other Topics |
| WOS Subject | Multidisciplinary Sciences |
| WOS ID | WOS:000642744500028 |
| Publisher | NATURE RESEARCH |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.qdio.ac.cn/handle/337002/170818 |
| Collection | 实验海洋生物学重点实验室 |
| Corresponding Author | Cui, Zhaoxia; Li, Fuhua; Chu, Ka Hou |
| Affiliation | 1.Ningbo Univ, Sch Marine Sci, Ningbo, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China 5.Univ Sunshine Coast, Sch Sci & Engn, Sippy Downs, Qld, Australia 6.Chinese Univ Hong Kong, Sch Life Sci, Simon FS Li Marine Sci Lab, Shatin, Hong Kong, Peoples R China 7.BGI Shenzhen, BGI Qingdao, Qingdao, Peoples R China 8.IGENE, Hangzhou, Peoples R China 9.Sun Yat Sen Univ, Sch Pharmaceut Sci Shenzhen, Guangzhou, Peoples R China 10.Univ Tasmania, Inst Marine & Antarctic Studies, Hobart, Tas, Australia 11.Natl Taiwan Ocean Univ, Inst Marine Biol, Keelung, Taiwan 12.Natl Taiwan Ocean Univ, Ctr Excellence Oceans, Keelung, Taiwan |
| First Author Affilication | Institute of Oceanology, Chinese Academy of Sciences |
| Corresponding Author Affilication | Institute of Oceanology, Chinese Academy of Sciences |
| Recommended Citation GB/T 7714 | Cui, Zhaoxia,Liu, Yuan,Yuan, Jianbo,et al. The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation[J]. NATURE COMMUNICATIONS,2021,12(1):13. |
| APA | Cui, Zhaoxia.,Liu, Yuan.,Yuan, Jianbo.,Zhang, Xiaojun.,Ventura, Tomer.,...&Chu, Ka Hou.(2021).The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation.NATURE COMMUNICATIONS,12(1),13. |
| MLA | Cui, Zhaoxia,et al."The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation".NATURE COMMUNICATIONS 12.1(2021):13. |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| s41467-021-22604-3.p（3091KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | View | |
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