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The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation
Cui, Zhaoxia1,2,3; Liu, Yuan2,3,4; Yuan, Jianbo2,3,4; Zhang, Xiaojun2,3,4; Ventura, Tomer5; Ma, Ka Yan6; Sun, Shuai7; Song, Chengwen2; Zhan, Dongliang8; Yang, Yanan1; Liu, Hourong2; Fan, Guangyi7; Cai, Qingle8; Du, Jing2; Qin, Jing6,9; Shi, Chengcheng7; Hao, Shijie7; Fitzgibbon, Quinn P.10; Smith, Gregory G.10; Xiang, Jianhai2,3,4; Chan, Tin-Yam11,12; Hui, Min2,3,4; Bao, Chenchang1; Li, Fuhua2,3,4; Chu, Ka Hou6
2021-04-22
Source PublicationNATURE COMMUNICATIONS
ISSN2041-1723
Volume12Issue:1Pages:13
Corresponding AuthorCui, Zhaoxia(cuizhaoxia@nbu.edu.cn) ; Li, Fuhua(fhli@qdio.ac.cn) ; Chu, Ka Hou(kahouchu@cuhk.edu.hk)
AbstractBrachyurans, or crabs, are of commercial and ecological importance, but limited genomic resources exist. Here the authors present a chromosome-level genome and expression data for the Chinese mitten crab, to shed light on the biology of this group. The infraorder Brachyura (true or short-tailed crabs) represents a successful group of marine invertebrates yet with limited genomic resources. Here we report a chromosome-anchored reference genome and transcriptomes of the Chinese mitten crab Eriocheir sinensis, a catadromous crab and invasive species with wide environmental tolerance, strong osmoregulatory capacity and high fertility. We show the expansion of specific gene families in the crab, including F-ATPase, which enhances our knowledge on the adaptive plasticity of this successful invasive species. Our analysis of spatio-temporal transcriptomes and the genome of E. sinensis and other decapods shows that brachyurization development is associated with down-regulation of Hox genes at the megalopa stage when tail shortening occurs. A better understanding of the molecular mechanism regulating sexual development is achieved by integrated analysis of multiple omics. These genomic resources significantly expand the gene repertoire of Brachyura, and provide insights into the biology of this group, and Crustacea in general.
DOI10.1038/s41467-021-22604-3
Indexed BySCI
Language英语
Funding ProjectNational Key R&D Program of China[2018YFD0900303] ; National Natural Science Foundation of China[32072964] ; Ten Thousand Talents Program ; Scientific and Technological Innovation Project of Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02] ; Collaborative Research Fund from the Research Grants Council, Hong Kong Special Administrative Region, China[C4042-14G] ; Ministry of Science and Technology, Taiwan ; Center of Excellence for the Oceans, National Taiwan Ocean University
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000642744500028
PublisherNATURE RESEARCH
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/170818
Collection实验海洋生物学重点实验室
Corresponding AuthorCui, Zhaoxia; Li, Fuhua; Chu, Ka Hou
Affiliation1.Ningbo Univ, Sch Marine Sci, Ningbo, Peoples R China
2.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao, Peoples R China
3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China
4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China
5.Univ Sunshine Coast, Sch Sci & Engn, Sippy Downs, Qld, Australia
6.Chinese Univ Hong Kong, Sch Life Sci, Simon FS Li Marine Sci Lab, Shatin, Hong Kong, Peoples R China
7.BGI Shenzhen, BGI Qingdao, Qingdao, Peoples R China
8.IGENE, Hangzhou, Peoples R China
9.Sun Yat Sen Univ, Sch Pharmaceut Sci Shenzhen, Guangzhou, Peoples R China
10.Univ Tasmania, Inst Marine & Antarctic Studies, Hobart, Tas, Australia
11.Natl Taiwan Ocean Univ, Inst Marine Biol, Keelung, Taiwan
12.Natl Taiwan Ocean Univ, Ctr Excellence Oceans, Keelung, Taiwan
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Corresponding Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Cui, Zhaoxia,Liu, Yuan,Yuan, Jianbo,et al. The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation[J]. NATURE COMMUNICATIONS,2021,12(1):13.
APA Cui, Zhaoxia.,Liu, Yuan.,Yuan, Jianbo.,Zhang, Xiaojun.,Ventura, Tomer.,...&Chu, Ka Hou.(2021).The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation.NATURE COMMUNICATIONS,12(1),13.
MLA Cui, Zhaoxia,et al."The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation".NATURE COMMUNICATIONS 12.1(2021):13.
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