Institutional Repository of Key Laboratory of Marine Ecology & Environmental Sciences, CAS
| Mitochondrial genome of the harmful algal bloom species Odontella regia (Mediophyceae, Bacillariophyta) | |
Wang, Yichao1,2,3,4; Chen, Yang1,2,3,4; Wang, Jing1,2,4 ; Liu, Feng1,2,4; Chen, Nansheng1,2,4,5
| |
| 2021-01-14 | |
| Source Publication | JOURNAL OF APPLIED PHYCOLOGY
 |
| ISSN | 0921-8971 |
| Pages | 14 |
| Corresponding Author | Chen, Nansheng(chenn@qdio.ac.cn) |
| Abstract | Recent development of DNA sequencing technologies has enabled successful construction of thousands of mitochondrial genomes. Nevertheless, only 33 mitochondrial genomes have been reported for species in Bacillariophyta, which includes harmful algal bloom (HAB) species. In this study, we determined the complete mitogenome of the Bacillariophyta HAB species Odontella regia. For comparison, we also constructed the mitogenome of Lithodesmium undulatum, another Bacillariophyta species. Both strains were isolated in the Jiaozhou Bay, an epitome of China's coastal ecosystem and an ideal site for HAB research. These two mitogenomes were characterized as 37,617 bp and 37,057 bp circular-mapping molecules with AT content of 73.4% and 75.3%, respectively. The phylogenetic tree based on 32 protein-coding genes of the mitogenome encoded in 35 Bacillariophyta species revealed that the class Mediophyceae consisted of multi-phyletic clades. While O. regia formed an independent clade, L. undulatum was closely related to Thalassiosira pseudonana and Skeletonema marinoi. Synteny comparison of O. regia and L. undulatum mitogenomes and mitogenomes of three closely related species displayed substantial differences among lineages in Mediophyceae by a series of gene translocations and/or inversion with many conserved gene blocks such as rpl2-rps19-rps3-rpl16-atp9. These analyses suggested a complex evolutionary relationship in Mediophyceae in which the mitogenome of O. regia was the least conservative compared with the mitogenomes of four other Bacillariophyta species. Further studies are needed to clarify detailed phylogenetic relationships in Bacillariophyta. |
| Keyword | Odontella regia Lithodesmium undulatum Harmful algal blooms HAB species Mitochondrial genome Comparative genomics |
| DOI | 10.1007/s10811-020-02364-1 |
| Indexed By | SCI |
| Language | 英语 |
| Funding Project | Marine S & T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao)[2018SDKJ0504] ; Strategic Priority Research Program of Chinese Academy of Sciences[XDB42000000] ; Chinese Academy of Sciences Pioneer Hundred Talents Program ; Taishan Scholar Project Special Fund ; Qingdao Innovation and Creation Plan (Talent Development Program-5th Annual Pioneer and Innovator Leadership Award)[19-3-2-16-zhc] ; Key Research Program of Frontier Sciences, Chinese Academy of Sciences[QYZDB-SSW-DQC023] ; Major Scientific and Technological Innovation Project of Shandong Province[2019JZZY020706] |
| WOS Research Area | Biotechnology & Applied Microbiology ; Marine & Freshwater Biology |
| WOS Subject | Biotechnology & Applied Microbiology ; Marine & Freshwater Biology |
| WOS ID | WOS:000607758800002 |
| Publisher | SPRINGER |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.qdio.ac.cn/handle/337002/169996 |
| Collection | 海洋生态与环境科学重点实验室 |
| Corresponding Author | Chen, Nansheng |
| Affiliation | 1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266200, Peoples R China 3.Univ Chinese Acad Sci, Beijing 10039, Peoples R China 4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China 5.Simon Fraser Univ, Dept Mol Biol & Biochem, 8888 Univ Dr, Burnaby, BC V5A 1S6, Canada |
| First Author Affilication | Key Laboratory of Marine Ecology & Environmental Sciences, CAS |
| Corresponding Author Affilication | Key Laboratory of Marine Ecology & Environmental Sciences, CAS |
| Recommended Citation GB/T 7714 | Wang, Yichao,Chen, Yang,Wang, Jing,et al. Mitochondrial genome of the harmful algal bloom species Odontella regia (Mediophyceae, Bacillariophyta)[J]. JOURNAL OF APPLIED PHYCOLOGY,2021:14. |
| APA | Wang, Yichao,Chen, Yang,Wang, Jing,Liu, Feng,&Chen, Nansheng.(2021).Mitochondrial genome of the harmful algal bloom species Odontella regia (Mediophyceae, Bacillariophyta).JOURNAL OF APPLIED PHYCOLOGY,14. |
| MLA | Wang, Yichao,et al."Mitochondrial genome of the harmful algal bloom species Odontella regia (Mediophyceae, Bacillariophyta)".JOURNAL OF APPLIED PHYCOLOGY (2021):14. |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| Wang2021_Article_Mit（1281KB） | 期刊论文 | 出版稿 | 延迟开放 | CC BY-NC-SA | View 2023-7-1后可获取 | |
Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.
Edit Comment