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Draft genomes of female and male turbot Scophthalmus maximus
Xu, Xi-wen1,2; Shao, Chang-wei1,2; Xu, Hao1,3; Zhou, Qian1,2; You, Feng4; Wang, Na1,2; Li, Wen-long1; Li, Ming1,3; Chen, Song-lin1,2
2020-03-12
Source PublicationSCIENTIFIC DATA
Volume7Issue:1Pages:8
Corresponding AuthorChen, Song-lin(chensl@ysfri.ac.cn)
AbstractTurbot (Scophthalmus maximus) is a commercially important flatfish species in aquaculture. It has a drastic sexual dimorphism, with females growing faster than males. In the present study, we sequenced and de novo assembled female and male turbot genomes. The assembled female genome was 568 Mb (scaffold N50, 6.2 Mb, BUSCO 97.4%), and the male genome was 584 Mb (scaffold N50, 5.9 Mb, BUSCO 96.6%). Using two genetic maps, we anchored female scaffolds representing 535 Mb onto 22 chromosomes. Annotation of the female anchored genome identified 87.8 Mb transposon elements and 20,134 genes. We identified 17,936 gene families, of which 369 gene families were flatfish specific. Phylogenetic analysis showed that the turbot, Japanese flounder and Chinese tongue sole form a clade that diverged from other teleosts approximately 78 Mya. This report of female and male turbot draft genomes and annotated genes provides a new resource for identifying sex determination genes, elucidating the evolution of adaptive traits in flatfish and developing genetic techniques to increase the sustainability of turbot aquaculture.
DOI10.1038/s41597-020-0426-6
Indexed BySCI
Language英语
Funding ProjectSpecial Scientific Research Funds for Central Non-profit Institutes, Yellow Sea Fisheries Research Institute[20603022017003] ; Natural Science Foundation of Shandong Province[ZR2016QZ003] ; AoShan Talents Program - Qingdao National Laboratory for Marine Science and Technology[2017ASTCP-OS15] ; Taishan Scholar Climbing Project Fund of Shandong of China
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000519439700001
PublisherNATURE PUBLISHING GROUP
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/165862
Collection中国科学院海洋研究所
Corresponding AuthorChen, Song-lin
Affiliation1.Chinese Acad Fishery Sci, Pilot Natl Lab Marine Sci & Technol Qingdao, Lab Marine Fisheries Sci & Food Prod Proc, Yellow Sea Fisheries Res Inst, Qingdao, Peoples R China
2.Minist Agr, Key Lab Sustainable Dev Marine Fisheries, Qingdao, Peoples R China
3.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China
4.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China
Recommended Citation
GB/T 7714
Xu, Xi-wen,Shao, Chang-wei,Xu, Hao,et al. Draft genomes of female and male turbot Scophthalmus maximus[J]. SCIENTIFIC DATA,2020,7(1):8.
APA Xu, Xi-wen.,Shao, Chang-wei.,Xu, Hao.,Zhou, Qian.,You, Feng.,...&Chen, Song-lin.(2020).Draft genomes of female and male turbot Scophthalmus maximus.SCIENTIFIC DATA,7(1),8.
MLA Xu, Xi-wen,et al."Draft genomes of female and male turbot Scophthalmus maximus".SCIENTIFIC DATA 7.1(2020):8.
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