Identification and bioinformatics analysis of pseudogenes from whole genome sequence of Phaeodactylum tricornutum

doi:10.1007/s11434-012-5174-3

IOCAS-IR > 实验海洋生物学重点实验室

	Identification and bioinformatics analysis of pseudogenes from whole genome sequence of Phaeodactylum tricornutum
	Ji ChangMian; Huang AiYou; Liu WenLing; Pan GuangHua; Wang GuangCe; Wang, GC
	2013-03-01
发表期刊	CHINESE SCIENCE BULLETIN
ISSN	1001-6538
卷号	58 期号:9 页码:1010-1017
摘要	Pseudogenes share sequence similarities with functional genes, but in general they have lost their protein-coding ability. The identification of pseudogenes is a very important step in genome annotation. Phaeodactylum tricornutum is a marine diatom that is rich in polyunsaturated fatty acids (PUFAs). The genome of P. tricornutum has been completely sequenced. To identify pseudogenes in P. tricornutum, we developed a pipeline to discover and characterize pseudogenes. We identified a total of 1654 'true' processed pseudogenes, 714 duplicated pseudogenes and 4729 pseudogene fragments. The results of the bioinformatics analysis indicated that the genome sequence of P. tricornutum contained many pseudogenes and pseudogene fragments.
关键词	Phaeodactylum tricornutum pseudogene pseudogene fragment bioinformatics
DOI	10.1007/s11434-012-5174-3
语种	英语
资助项目	National Basic Projects for Science and Technology[SQ2012FY4910019-1] ; Nonprofit Research Project for the State Oceanic Administration[201105008-2] ; National Natural Science Foundation of China[41176137]
WOS研究方向	Science & Technology - Other Topics
WOS类目	Multidisciplinary Sciences
WOS记录号	WOS:000316219500009
出版者	SCIENCE PRESS
引用统计	被引频次：2[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/16585
专题	实验海洋生物学重点实验室
通讯作者	Wang, GC
推荐引用方式 GB/T 7714	Ji ChangMian,Huang AiYou,Liu WenLing,et al. Identification and bioinformatics analysis of pseudogenes from whole genome sequence of Phaeodactylum tricornutum[J]. CHINESE SCIENCE BULLETIN,2013,58(9):1010-1017.
APA	Ji ChangMian,Huang AiYou,Liu WenLing,Pan GuangHua,Wang GuangCe,&Wang, GC.(2013).Identification and bioinformatics analysis of pseudogenes from whole genome sequence of Phaeodactylum tricornutum.CHINESE SCIENCE BULLETIN,58(9),1010-1017.
MLA	Ji ChangMian,et al."Identification and bioinformatics analysis of pseudogenes from whole genome sequence of Phaeodactylum tricornutum".CHINESE SCIENCE BULLETIN 58.9(2013):1010-1017.

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