IOCAS-IR  > 实验海洋生物学重点实验室
Penaeid shrimp genome provides insights into benthic adaptation and frequent molting
Zhang, Xiaojun1,2; Yuan, Jianbo1,2; Sun, Yamin3; Li, Shihao1,2,4; Gao, Yi1,2,4; Yu, Yang1,2,4; Liu, Chengzhang1,2,4; Wang, Quanchao1,2,4; Lv, Xinjia1,5; Zhang, Xiaoxi1,5; Ma, Ka Yan6; Wang, Xiaobo7; Lin, Wenchao4; Wang, Long4; Zhu, Xueli4; Zhang, Chengsong1,2,4; Zhang, Jiquan1,2,4; Jin, Songjun1,2,4; Yu, Kuijie1,2,4; Kong, Jie8; Xu, Peng9; Chen, Jack10; Zhang, Hongbin11; Sorgeloos, Patrick12; Sagi, Amir13,14; Alcivar-Warren, Acacia15; Liu, Zhanjiang16; Wang, Lei17; Ruan, Jue7; Chu, Ka Hou6; Liu, Bin17; Li, Fuhua1,2,4; Xiang, Jianhai1,2,4
2019-01-21
发表期刊NATURE COMMUNICATIONS
ISSN2041-1723
卷号10页码:14
通讯作者Chu, Ka Hou(kahouchu@cuhk.edu.hk) ; Liu, Bin(liubin1981@nankai.edu.cn) ; Li, Fuhua(fhli@qdio.ac.cn) ; Xiang, Jianhai(jhxiang@qdio.ac.cn)
摘要Crustacea, the subphylum of Arthropoda which dominates the aquatic environment, is of major importance in ecology and fisheries. Here we report the genome sequence of the Pacific white shrimp Litopenaeus vannamei, covering similar to 1.66 Gb (scaffold N50 605.56 Kb) with 25,596 protein-coding genes and a high proportion of simple sequence repeats (>23.93%). The expansion of genes related to vision and locomotion is probably central to its benthic adaptation. Frequent molting of the shrimp may be explained by an intensified ecdysone signal pathway through gene expansion and positive selection. As an important aquaculture organism, L. vannamei has been subjected to high selection pressure during the past 30 years of breeding, and this has had a considerable impact on its genome. Decoding the L. vannamei genome not only provides an insight into the genetic underpinnings of specific biological processes, but also provides valuable information for enhancing crustacean aquaculture.
DOI10.1038/s41467-018-08197-4
收录类别SCI
语种英语
资助项目State 863 High Technology R&D Project of China[2012AA10A404] ; National Natural Science Foundation of China[31830100] ; National Natural Science Foundation of China[41876167] ; Qingdao National Laboratory for Marine Science and Technology[MS2017NO04] ; Hong Kong Collaborative Research Fund (CRF) project[C4042-14G] ; High Performance Computing Center, Institute of Oceanology, CAS ; RV KEXUE[KEXUE2018G19] ; State 863 High Technology R&D Project of China[2012AA10A404] ; National Natural Science Foundation of China[31830100] ; National Natural Science Foundation of China[41876167] ; Qingdao National Laboratory for Marine Science and Technology[MS2017NO04] ; Hong Kong Collaborative Research Fund (CRF) project[C4042-14G] ; High Performance Computing Center, Institute of Oceanology, CAS ; RV KEXUE[KEXUE2018G19]
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000456164800013
出版者NATURE PUBLISHING GROUP
引用统计
被引频次:399[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.qdio.ac.cn/handle/337002/160695
专题实验海洋生物学重点实验室
通讯作者Chu, Ka Hou; Liu, Bin; Li, Fuhua; Xiang, Jianhai
作者单位1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China
3.Tianjin Biochip Corp, Tianjin 300457, Peoples R China
4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China
5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
6.Chinese Univ Hong Kong, Sch Life Sci, Shatin, Hong Kong 999077, Peoples R China
7.Chinese Acad Agr Sci, Agr Genom Inst, Shenzhen 518120, Peoples R China
8.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Minist Agr, Key Lab Sustainable Utilizat Marine Fisheries Res, Qingdao 266071, Peoples R China
9.Xiamen Univ, Coll Ocean & Earth Sci, Xiamen 361102, Peoples R China
10.Simon Fraser Univ, Dept Mol Biol & Biochem, Burnaby, BC V5A 1S6, Canada
11.Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA
12.Univ Ghent, Lab Aquaculture & Artemia Reference Ctr, Coupure Links 653, B-9000 Ghent, Belgium
13.Negev Ben Gurion Univ, Dept Life Sci, IL-84105 Beer Sheva, Israel
14.Negev Ben Gurion Univ, Natl Inst Biotechnol, IL-84105 Beer Sheva, Israel
15.Environm Genom Inc, POB 196, Southborough, MA 01772 USA
16.Auburn Univ, Sch Fisheries Aquaculture & Aquat Sci, Auburn, AL 36849 USA
17.Nankai Univ, Coll Life Sci, Tianjin 300071, Peoples R China
第一作者单位中国科学院海洋研究所
通讯作者单位中国科学院海洋研究所
推荐引用方式
GB/T 7714
Zhang, Xiaojun,Yuan, Jianbo,Sun, Yamin,et al. Penaeid shrimp genome provides insights into benthic adaptation and frequent molting[J]. NATURE COMMUNICATIONS,2019,10:14.
APA Zhang, Xiaojun.,Yuan, Jianbo.,Sun, Yamin.,Li, Shihao.,Gao, Yi.,...&Xiang, Jianhai.(2019).Penaeid shrimp genome provides insights into benthic adaptation and frequent molting.NATURE COMMUNICATIONS,10,14.
MLA Zhang, Xiaojun,et al."Penaeid shrimp genome provides insights into benthic adaptation and frequent molting".NATURE COMMUNICATIONS 10(2019):14.
条目包含的文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可
Penaeid shrimp genom(3152KB)期刊论文出版稿限制开放CC BY-NC-SA浏览
个性服务
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Zhang, Xiaojun]的文章
[Yuan, Jianbo]的文章
[Sun, Yamin]的文章
百度学术
百度学术中相似的文章
[Zhang, Xiaojun]的文章
[Yuan, Jianbo]的文章
[Sun, Yamin]的文章
必应学术
必应学术中相似的文章
[Zhang, Xiaojun]的文章
[Yuan, Jianbo]的文章
[Sun, Yamin]的文章
相关权益政策
暂无数据
收藏/分享
文件名: Penaeid shrimp genome provides insights into benthic adaptation and frequent molting.pdf
格式: Adobe PDF
所有评论 (0)
暂无评论
 

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。