IOCAS-IR  > 实验海洋生物学重点实验室
Penaeid shrimp genome provides insights into benthic adaptation and frequent molting
Zhang, Xiaojun1,2; Yuan, Jianbo1,2; Sun, Yamin3; Li, Shihao1,2,4; Gao, Yi1,2,4; Yu, Yang1,2,4; Liu, Chengzhang1,2,4; Wang, Quanchao1,2,4; Lv, Xinjia1,5; Zhang, Xiaoxi1,5; Ma, Ka Yan6; Wang, Xiaobo7; Lin, Wenchao4; Wang, Long4; Zhu, Xueli4; Zhang, Chengsong1,2,4; Zhang, Jiquan1,2,4; Jin, Songjun1,2,4; Yu, Kuijie1,2,4; Kong, Jie8; Xu, Peng9; Chen, Jack10; Zhang, Hongbin11; Sorgeloos, Patrick12; Sagi, Amir13,14; Alcivar-Warren, Acacia15; Liu, Zhanjiang16; Wang, Lei17; Ruan, Jue7; Chu, Ka Hou6; Liu, Bin17; Li, Fuhua1,2,4; Xiang, Jianhai1,2,4
2019-01-21
Source PublicationNATURE COMMUNICATIONS
ISSN2041-1723
Volume10Pages:14
Corresponding AuthorChu, Ka Hou(kahouchu@cuhk.edu.hk) ; Liu, Bin(liubin1981@nankai.edu.cn) ; Li, Fuhua(fhli@qdio.ac.cn) ; Xiang, Jianhai(jhxiang@qdio.ac.cn)
AbstractCrustacea, the subphylum of Arthropoda which dominates the aquatic environment, is of major importance in ecology and fisheries. Here we report the genome sequence of the Pacific white shrimp Litopenaeus vannamei, covering similar to 1.66 Gb (scaffold N50 605.56 Kb) with 25,596 protein-coding genes and a high proportion of simple sequence repeats (>23.93%). The expansion of genes related to vision and locomotion is probably central to its benthic adaptation. Frequent molting of the shrimp may be explained by an intensified ecdysone signal pathway through gene expansion and positive selection. As an important aquaculture organism, L. vannamei has been subjected to high selection pressure during the past 30 years of breeding, and this has had a considerable impact on its genome. Decoding the L. vannamei genome not only provides an insight into the genetic underpinnings of specific biological processes, but also provides valuable information for enhancing crustacean aquaculture.
DOI10.1038/s41467-018-08197-4
Indexed BySCI
Language英语
Funding ProjectState 863 High Technology R&D Project of China[2012AA10A404] ; National Natural Science Foundation of China[31830100] ; National Natural Science Foundation of China[41876167] ; Qingdao National Laboratory for Marine Science and Technology[MS2017NO04] ; Hong Kong Collaborative Research Fund (CRF) project[C4042-14G] ; High Performance Computing Center, Institute of Oceanology, CAS ; RV KEXUE[KEXUE2018G19]
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000456164800013
PublisherNATURE PUBLISHING GROUP
Citation statistics
Cited Times:13[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/160695
Collection实验海洋生物学重点实验室
Corresponding AuthorChu, Ka Hou; Liu, Bin; Li, Fuhua; Xiang, Jianhai
Affiliation1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China
3.Tianjin Biochip Corp, Tianjin 300457, Peoples R China
4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China
5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
6.Chinese Univ Hong Kong, Sch Life Sci, Shatin, Hong Kong 999077, Peoples R China
7.Chinese Acad Agr Sci, Agr Genom Inst, Shenzhen 518120, Peoples R China
8.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Minist Agr, Key Lab Sustainable Utilizat Marine Fisheries Res, Qingdao 266071, Peoples R China
9.Xiamen Univ, Coll Ocean & Earth Sci, Xiamen 361102, Peoples R China
10.Simon Fraser Univ, Dept Mol Biol & Biochem, Burnaby, BC V5A 1S6, Canada
11.Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA
12.Univ Ghent, Lab Aquaculture & Artemia Reference Ctr, Coupure Links 653, B-9000 Ghent, Belgium
13.Negev Ben Gurion Univ, Dept Life Sci, IL-84105 Beer Sheva, Israel
14.Negev Ben Gurion Univ, Natl Inst Biotechnol, IL-84105 Beer Sheva, Israel
15.Environm Genom Inc, POB 196, Southborough, MA 01772 USA
16.Auburn Univ, Sch Fisheries Aquaculture & Aquat Sci, Auburn, AL 36849 USA
17.Nankai Univ, Coll Life Sci, Tianjin 300071, Peoples R China
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Corresponding Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Zhang, Xiaojun,Yuan, Jianbo,Sun, Yamin,et al. Penaeid shrimp genome provides insights into benthic adaptation and frequent molting[J]. NATURE COMMUNICATIONS,2019,10:14.
APA Zhang, Xiaojun.,Yuan, Jianbo.,Sun, Yamin.,Li, Shihao.,Gao, Yi.,...&Xiang, Jianhai.(2019).Penaeid shrimp genome provides insights into benthic adaptation and frequent molting.NATURE COMMUNICATIONS,10,14.
MLA Zhang, Xiaojun,et al."Penaeid shrimp genome provides insights into benthic adaptation and frequent molting".NATURE COMMUNICATIONS 10(2019):14.
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