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De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians
Teng Wen1,2; Cong Rihao1,3,4; Que Huayong1,3,4; Zhang Guofan1,3,4
2018-07-01
Source PublicationJOURNAL OF OCEANOLOGY AND LIMNOLOGY
ISSN2096-5508
Volume36Issue:4Pages:1408-1416
Corresponding AuthorQue Huayong(hque@qdio.ac.cn)
AbstractMolluscan shell color has received persistent attention for its distinctive diversity and complexity. In the present study, six transcriptome libraries obtained from two developmental stages, pre-pigmentation and post-pigmentation, were used for paired-end sequencing in the bay scallop Argopecten irradians. In total, 289 839 646 paired-end reads were assembled into 70 929 transcripts. Using BLASTX and BLASTN, 30 896 unigenes were successfully annotated against the SWISS-PROT, NR, and KOG database. Gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes classification identified numbers of unigenes involved in biomineralization and pigmentation. Digital gene expression analysis revealed that melanin, trace metal elements and porphyrins are potentially involved in shell coloration of A. irradians.
Keywordmolluscs shell coloration differentially expressed genes gene ontology
DOI10.1007/s00343-018-7063-3
Indexed BySCI
Language英语
Funding ProjectChina Agriculture Research System[CARS-49] ; Science and Technology Service Network Initiative of Chinese Academy of Sciences
WOS Research AreaMarine & Freshwater Biology ; Oceanography
WOS SubjectLimnology ; Oceanography
WOS IDWOS:000441231100035
PublisherSCIENCE PRESS
Citation statistics
Cited Times:2[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/159938
Collection中国科学院海洋研究所
Corresponding AuthorQue Huayong
Affiliation1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China
4.Natl & Local Joint Engn Lab Ecol Mariculture, Qingdao 266000, Peoples R China
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Corresponding Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Teng Wen,Cong Rihao,Que Huayong,et al. De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians[J]. JOURNAL OF OCEANOLOGY AND LIMNOLOGY,2018,36(4):1408-1416.
APA Teng Wen,Cong Rihao,Que Huayong,&Zhang Guofan.(2018).De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians.JOURNAL OF OCEANOLOGY AND LIMNOLOGY,36(4),1408-1416.
MLA Teng Wen,et al."De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians".JOURNAL OF OCEANOLOGY AND LIMNOLOGY 36.4(2018):1408-1416.
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