Knowledge Management System Of Institute of Oceanology, Chinese Academy of Sciences
| De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians | |
Teng Wen1,2 ; Cong Rihao1,3,4; Que Huayong1,3,4; Zhang Guofan1,3,4
| |
| 2018-07-01 | |
| 发表期刊 | JOURNAL OF OCEANOLOGY AND LIMNOLOGY
 |
| ISSN | 2096-5508 |
| 卷号 | 36期号:4页码:1408-1416 |
| 通讯作者 | Que Huayong(hque@qdio.ac.cn) |
| 摘要 | Molluscan shell color has received persistent attention for its distinctive diversity and complexity. In the present study, six transcriptome libraries obtained from two developmental stages, pre-pigmentation and post-pigmentation, were used for paired-end sequencing in the bay scallop Argopecten irradians. In total, 289 839 646 paired-end reads were assembled into 70 929 transcripts. Using BLASTX and BLASTN, 30 896 unigenes were successfully annotated against the SWISS-PROT, NR, and KOG database. Gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes classification identified numbers of unigenes involved in biomineralization and pigmentation. Digital gene expression analysis revealed that melanin, trace metal elements and porphyrins are potentially involved in shell coloration of A. irradians. |
| 关键词 | molluscs shell coloration differentially expressed genes gene ontology |
| DOI | 10.1007/s00343-018-7063-3 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | China Agriculture Research System[CARS-49] ; Science and Technology Service Network Initiative of Chinese Academy of Sciences ; China Agriculture Research System[CARS-49] ; Science and Technology Service Network Initiative of Chinese Academy of Sciences |
| WOS研究方向 | Marine & Freshwater Biology ; Oceanography |
| WOS类目 | Limnology ; Oceanography |
| WOS记录号 | WOS:000441231100035 |
| 出版者 | SCIENCE PRESS |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/159938 |
| 专题 | 中国科学院海洋研究所 |
| 通讯作者 | Que Huayong |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China 4.Natl & Local Joint Engn Lab Ecol Mariculture, Qingdao 266000, Peoples R China |
| 第一作者单位 | 中国科学院海洋研究所 |
| 通讯作者单位 | 中国科学院海洋研究所 |
| 推荐引用方式 GB/T 7714 | Teng Wen,Cong Rihao,Que Huayong,et al. De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians[J]. JOURNAL OF OCEANOLOGY AND LIMNOLOGY,2018,36(4):1408-1416. |
| APA | Teng Wen,Cong Rihao,Que Huayong,&Zhang Guofan.(2018).De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians.JOURNAL OF OCEANOLOGY AND LIMNOLOGY,36(4),1408-1416. |
| MLA | Teng Wen,et al."De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians".JOURNAL OF OCEANOLOGY AND LIMNOLOGY 36.4(2018):1408-1416. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| De novo transcriptom（945KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。
修改评论