Knowledge Management System Of Institute of Oceanology, Chinese Academy of Sciences
| De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians | |
Teng Wen1,2 ; Cong Rihao1,3,4; Que Huayong1,3,4; Zhang Guofan1,3,4
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| 2018-07-01 | |
| Source Publication | JOURNAL OF OCEANOLOGY AND LIMNOLOGY
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| ISSN | 2096-5508 |
| Volume | 36Issue:4Pages:1408-1416 |
| Corresponding Author | Que Huayong(hque@qdio.ac.cn) |
| Abstract | Molluscan shell color has received persistent attention for its distinctive diversity and complexity. In the present study, six transcriptome libraries obtained from two developmental stages, pre-pigmentation and post-pigmentation, were used for paired-end sequencing in the bay scallop Argopecten irradians. In total, 289 839 646 paired-end reads were assembled into 70 929 transcripts. Using BLASTX and BLASTN, 30 896 unigenes were successfully annotated against the SWISS-PROT, NR, and KOG database. Gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes classification identified numbers of unigenes involved in biomineralization and pigmentation. Digital gene expression analysis revealed that melanin, trace metal elements and porphyrins are potentially involved in shell coloration of A. irradians. |
| Keyword | molluscs shell coloration differentially expressed genes gene ontology |
| DOI | 10.1007/s00343-018-7063-3 |
| Indexed By | SCI |
| Language | 英语 |
| Funding Project | China Agriculture Research System[CARS-49] ; Science and Technology Service Network Initiative of Chinese Academy of Sciences |
| WOS Research Area | Marine & Freshwater Biology ; Oceanography |
| WOS Subject | Limnology ; Oceanography |
| WOS ID | WOS:000441231100035 |
| Publisher | SCIENCE PRESS |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.qdio.ac.cn/handle/337002/159938 |
| Collection | 中国科学院海洋研究所 |
| Corresponding Author | Que Huayong |
| Affiliation | 1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China 4.Natl & Local Joint Engn Lab Ecol Mariculture, Qingdao 266000, Peoples R China |
| First Author Affilication | Institute of Oceanology, Chinese Academy of Sciences |
| Corresponding Author Affilication | Institute of Oceanology, Chinese Academy of Sciences |
| Recommended Citation GB/T 7714 | Teng Wen,Cong Rihao,Que Huayong,et al. De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians[J]. JOURNAL OF OCEANOLOGY AND LIMNOLOGY,2018,36(4):1408-1416. |
| APA | Teng Wen,Cong Rihao,Que Huayong,&Zhang Guofan.(2018).De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians.JOURNAL OF OCEANOLOGY AND LIMNOLOGY,36(4),1408-1416. |
| MLA | Teng Wen,et al."De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians".JOURNAL OF OCEANOLOGY AND LIMNOLOGY 36.4(2018):1408-1416. |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| De novo transcriptom（945KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | Application Full Text | |
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