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Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)
Cheng, Jiao1,3,4; Chan, Tin-Yam5,6; Zhang, Nan1; Sun, Song1,3,4; Sha, Zhong-li1,2,3,4
2018-09-01
Source PublicationZOOLOGICA SCRIPTA
ISSN0300-3256
Volume47Issue:5Pages:582-594
Corresponding AuthorSha, Zhong-li(shazl@qdio.ac.cn)
AbstractThe taxonomy and phylogeny of Penaeoidea have long been fraught with controversy. Here, we carried out the first mitochondrial phylogenomic analysis on all the penaeoid families and tribes, including nine newly sequenced and 14 published mitogenomes, towards elucidating the phylogeny and evolutionary history of Penaeoidea. All these nine mitogenomes exhibit the pancrustacean ground pattern, except that Benthonectes filipes contains two additional clusters of tRNA(Ala), tRNA(Arg) and tRNA(Asn) and an uncommon noncoding region. The resulted phylogenetic tree is generally well resolved with Benthesicymidae sister to Aristeidae, forming a clade with Solenoceridae. Contrary to traditional classification, this clade has a sister relationship with the tribe Penaeini of the family Penaeidae. The family Sicyoniidae is deeply nested within the penaeid tribe Trachypenaeini which forms a sister clade with the remaining penaeid tribe, Parapenaeini. As the family Penaeidae is recovered to be polyphyletic, the three tribes in Penaeidae are all elevated to familial status. On the other hand, the family Sicyoniidae is retained to accommodate Trachypenaeini because they are now synonyms and the former name is more senior. This work is the first molecular analysis concurring with the latest findings in fossil assessments showing that Parapeaneini is the most primitive in Penaeoidae. Our results also illustrate a shallow-water origin and an onshore-offshore evolutionary shift in penaeoid shrimps.
Keywordevolution mitochondrial genome Penaeoidea phylogeny taxonomy
DOI10.1111/zsc.12298
Indexed BySCI
Language英语
Funding ProjectChinese Academy of Sciences[QYZDBSSW-DQC036] ; Chinese Academy of Sciences[XDA11030201] ; Chinese Academy of Sciences[XDA1103040102] ; RV KEXUE[KEXUE2016G05] ; Ministry of Science and Technology in Taiwan ; Center of Excellence for the Oceans, National Taiwan Ocean University from The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project by the Ministry of Education in Taiwan
WOS Research AreaEvolutionary Biology ; Zoology
WOS SubjectEvolutionary Biology ; Zoology
WOS IDWOS:000441447400006
PublisherWILEY
Citation statistics
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/159733
Collection中国科学院海洋研究所
Corresponding AuthorSha, Zhong-li
Affiliation1.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China
3.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China
4.Univ Chinese Acad Sci, Beijing, Peoples R China
5.Natl Taiwan Ocean Univ, Inst Marine Biol, Keelung, Taiwan
6.Natl Taiwan Ocean Univ, Ctr Excellence Oceans, Keelung, Taiwan
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Corresponding Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Cheng, Jiao,Chan, Tin-Yam,Zhang, Nan,et al. Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)[J]. ZOOLOGICA SCRIPTA,2018,47(5):582-594.
APA Cheng, Jiao,Chan, Tin-Yam,Zhang, Nan,Sun, Song,&Sha, Zhong-li.(2018).Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda).ZOOLOGICA SCRIPTA,47(5),582-594.
MLA Cheng, Jiao,et al."Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)".ZOOLOGICA SCRIPTA 47.5(2018):582-594.
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