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Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon
Yuan, Jianbo1,2; Zhang, Xiaojun1,2; Liu, Chengzhang1; Yu, Yang1; Wei, Jiankai3; Li, Fuhua1,2; Xiang, Jianhai1,2
2018-06-01
Source PublicationMARINE GENOMICS
ISSN1874-7787
Volume39Pages:22-25
Corresponding AuthorZhang, Xiaojun(xjzhang@qdio.ac.cn) ; Xiang, Jianhai(jhxiang@qdio.ac.cn)
AbstractPenaeid shrimps are among the most economically important crustaceans, which provide an important global food source. These species exhibit complex body plans and novelties, such as segments and appendages, which render them interesting organisms for developmental biology study of crustaceans. However, limited genomic resources have been put forward for the researches of them. Here, we report the genome sequencing and draft assembly of two economically important penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon. A total of 132.86 Gb and 132.83 Gb sequencing data was obtained in the two shrimp species. The genome assembly, a total length of 1.94 Gb and 2.04 Gb in M. japonicus and P. monodon, respectively, covers more than 97% of coding regions. We further identified 626 Mb (34.96%) and 833 Mb (46.68%) repeats, 16,716 and 18,100 genes in these two genomes, respectively. We also identified Hox genes that are important to their body plans. These data will provide valuable resources for the study of selective breeding and some plastic biological characters of penaeid shrimps, including molting, lobstering, brooding eggs and sensitization in humans.
KeywordPenaeid shrimps Genome Assembly Annotation
DOI10.1016/j.margen.2017.12.006
Indexed BySCI
Language英语
Funding ProjectNational Natural Science Foundation of China[41506189] ; National Natural Science Foundation of China[31672632] ; National Natural Science Foundation of China[41376165] ; China Agriculture Research system-48 (CARS-48) ; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02]
WOS Research AreaGenetics & Heredity ; Marine & Freshwater Biology
WOS SubjectGenetics & Heredity ; Marine & Freshwater Biology
WOS IDWOS:000436207800007
PublisherELSEVIER SCIENCE BV
Citation statistics
Cited Times:8[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/159491
Collection实验海洋生物学重点实验室
Corresponding AuthorZhang, Xiaojun; Xiang, Jianhai
Affiliation1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China
3.Ocean Univ China, Coll Marine Life Sci, Minist Educ, Key Lab Marine Genet & Breeding, Qingdao 266003, Peoples R China
First Author AffilicationKey Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
Corresponding Author AffilicationKey Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Yuan, Jianbo,Zhang, Xiaojun,Liu, Chengzhang,et al. Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon[J]. MARINE GENOMICS,2018,39:22-25.
APA Yuan, Jianbo.,Zhang, Xiaojun.,Liu, Chengzhang.,Yu, Yang.,Wei, Jiankai.,...&Xiang, Jianhai.(2018).Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon.MARINE GENOMICS,39,22-25.
MLA Yuan, Jianbo,et al."Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon".MARINE GENOMICS 39(2018):22-25.
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