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Complete genome sequence of shrimp hemocyte iridescent virus (SHIV) isolated from white leg shrimp, Litopenaeus vannamei
Qiu, Liang1,2; Chen, Meng-Meng1,2; Wang, Ruo-Yu1,3; Wan, Xiao-Yuan1; Li, Chen1; Zhang, Qing-Li1,2; Dong, Xuan1; Yang, Bing1; Xiang, Jian-Hai4; Huang, Jie1,2,3
2018-03-01
Source PublicationARCHIVES OF VIROLOGY
ISSN0304-8608
Volume163Issue:3Pages:781-785
Corresponding AuthorHuang, Jie(huangjie@ysfri.ac.cn)
AbstractInfection with shrimp hemocyte iridescent virus (SHIV), a new virus of the family Iridoviridae isolated in China, results in a high mortality rate in white leg shrimp (Litopenaeus vannamei). The complete genome sequence of SHIV was determined and analyzed in this study. The genomic DNA was 165,809 bp long with 34.6% G+C content and 170 open reading frames (ORFs). Dotplot analysis showed that the longest repetitive region was 320 bp in length, including 11 repetitions of an 18-bp sequence and 3.1 repetitions of a 39-bp sequence. Two phylogenetic trees were constructed based on 27 or 16 concatenated sequences of proteins encoded by genes that are conserved between SHIV homologous and other iridescent viruses. The results of this study, suggest that SHIV should be considered a member of the proposed new genus "Xiairidovirus".
DOI10.1007/s00705-017-3642-4
Indexed BySCI
Language英语
Funding ProjectChina Agriculture Research System[CARS-47] ; China ASEAN Maritime Cooperation Fund Project ; Program of Introducing Internationally Advanced Agricultural Science and Technology[948: 2016-X56] ; Project of the Aoshan Science and Technology Innovation Program of Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02] ; Construction Programme for Distinguished Taishan Scholars of Shandong Province of China
WOS Research AreaVirology
WOS SubjectVirology
WOS IDWOS:000425289200029
PublisherSPRINGER WIEN
Citation statistics
Cited Times:5[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/158092
Collection实验海洋生物学重点实验室
Corresponding AuthorHuang, Jie
Affiliation1.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst,Qingdao Natl Lab Ma, Qingdao Key Lab Mariculture Epidemiol & Biosecur, Minist Agr,Funct Lab Marine Fisheries Sci & Food, Qingdao 266071, Peoples R China
2.Shanghai Ocean Univ, Shanghai 201306, Peoples R China
3.Dalian Ocean Univ, Dalian 116023, Peoples R China
4.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China
Recommended Citation
GB/T 7714
Qiu, Liang,Chen, Meng-Meng,Wang, Ruo-Yu,et al. Complete genome sequence of shrimp hemocyte iridescent virus (SHIV) isolated from white leg shrimp, Litopenaeus vannamei[J]. ARCHIVES OF VIROLOGY,2018,163(3):781-785.
APA Qiu, Liang.,Chen, Meng-Meng.,Wang, Ruo-Yu.,Wan, Xiao-Yuan.,Li, Chen.,...&Huang, Jie.(2018).Complete genome sequence of shrimp hemocyte iridescent virus (SHIV) isolated from white leg shrimp, Litopenaeus vannamei.ARCHIVES OF VIROLOGY,163(3),781-785.
MLA Qiu, Liang,et al."Complete genome sequence of shrimp hemocyte iridescent virus (SHIV) isolated from white leg shrimp, Litopenaeus vannamei".ARCHIVES OF VIROLOGY 163.3(2018):781-785.
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