Institutional Repository of Key Laboratory of Marine Ecology & Environmental Sciences, CAS
| Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions | |
Zhang Libin1,2; Feng Qiming1,3; Sun Lina1,2; Fang Yan4; Xu Dongxue5 ; Zhang Tao1,2; Yang Hongsheng1,2
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| 2018-05-01 | |
| Source Publication | ACTA OCEANOLOGICA SINICA
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| ISSN | 0253-505X |
| Volume | 37Issue:5Pages:54-66 |
| Corresponding Author | Yang Hongsheng(hshyang@qdio.ac.cn) |
| Abstract | Sea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light ("light"), normal light ("control") and fully dark ("dark") environment. In the comparisons of "control" vs. "dark", "control" vs. "light" and "dark" vs. "light", 1 161, 113 and 1 705 differentially expressed genes (DEGs) were identified following the criteria of vertical bar log(2)ratio vertical bar >= 1 and FDR <= 0.001, respectively. Gene ontology analysis showed that "cellular process" and "binding" enriched the most DEGs in the category of "biological process" and "molecular function", while "cell" and "cell part" enriched the most DEGs in the category of "cellular component". And the DEGs were mapped to 214, 41 and 229 pathways in the Kyoto Encyclopedia of Genes and Genomes database, and 51, 2 and 57 pathways were significantly enriched, respectively. Light-specific DEGs identified in this study will be important targets for further investigation to establish the biochemical mechanisms involved in the adaption of this sea cucumber to changes in the level of environmental light. |
| Keyword | sea cucumber Apostichopus japonicus gene expression dark light body wall |
| DOI | 10.1007/s13131-017-1101-4 |
| Indexed By | SCI |
| Language | 英语 |
| Funding Project | National Natural Science Foundation of China[41676136] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA11020703] ; Science and Technology Major Project of Shandong Province (Industry Transformation and Upgrading)[2015ZDZX05002] |
| WOS Research Area | Oceanography |
| WOS Subject | Oceanography |
| WOS ID | WOS:000431898900008 |
| Publisher | SPRINGER |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.qdio.ac.cn/handle/337002/157575 |
| Collection | 海洋生态与环境科学重点实验室 |
| Corresponding Author | Yang Hongsheng |
| Affiliation | 1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Ludong Univ, Sch Agr, Yantai 264025, Peoples R China 5.Qingdao Agr Univ, Coll Marine Sci & Engn, Qingdao 266109, Peoples R China |
| First Author Affilication | Key Laboratory of Marine Ecology & Environmental Sciences, CAS |
| Corresponding Author Affilication | Key Laboratory of Marine Ecology & Environmental Sciences, CAS |
| Recommended Citation GB/T 7714 | Zhang Libin,Feng Qiming,Sun Lina,et al. Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions[J]. ACTA OCEANOLOGICA SINICA,2018,37(5):54-66. |
| APA | Zhang Libin.,Feng Qiming.,Sun Lina.,Fang Yan.,Xu Dongxue.,...&Yang Hongsheng.(2018).Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions.ACTA OCEANOLOGICA SINICA,37(5),54-66. |
| MLA | Zhang Libin,et al."Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions".ACTA OCEANOLOGICA SINICA 37.5(2018):54-66. |
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| File Name/Size | DocType | Version | Access | License | ||
| Differential gene ex（337KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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