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Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions
Zhang Libin1; Feng Qiming2; Sun Lina1; Fang Yan3; Xu Dongxue4; Zhang Tao1; Yang Hongsheng1
2018-05-01
Source PublicationACTA OCEANOLOGICA SINICA
ISSN0253-505X
Volume37Issue:5Pages:54-66
SubtypeArticle
AbstractSea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light ("light"), normal light ("control") and fully dark ("dark") environment. In the comparisons of "control" vs. "dark", "control" vs. "light" and "dark" vs. "light", 1 161, 113 and 1 705 differentially expressed genes (DEGs) were identified following the criteria of vertical bar log(2)ratio vertical bar >= 1 and FDR <= 0.001, respectively. Gene ontology analysis showed that "cellular process" and "binding" enriched the most DEGs in the category of "biological process" and "molecular function", while "cell" and "cell part" enriched the most DEGs in the category of "cellular component". And the DEGs were mapped to 214, 41 and 229 pathways in the Kyoto Encyclopedia of Genes and Genomes database, and 51, 2 and 57 pathways were significantly enriched, respectively. Light-specific DEGs identified in this study will be important targets for further investigation to establish the biochemical mechanisms involved in the adaption of this sea cucumber to changes in the level of environmental light.
Keywordsea cucumber Apostichopus japonicus gene expression dark light body wall
Subject AreaOceanography
DOI10.1007/s13131-017-1101-4
Indexed BySCIE
Language英语
WOS Research AreaOceanography
WOS IDWOS:000431898900008
PublisherSPRINGER
Citation statistics
Cited Times:2[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/157575
Collection海洋生态与环境科学重点实验室
Affiliation1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
4.Ludong Univ, Sch Agr, Yantai 264025, Peoples R China
5.Qingdao Agr Univ, Coll Marine Sci & Engn, Qingdao 266109, Peoples R China
First Author AffilicationKey Laboratory of Marine Ecology & Environmental Sciences, CAS
Recommended Citation
GB/T 7714
Zhang Libin,Feng Qiming,Sun Lina,et al. Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions[J]. ACTA OCEANOLOGICA SINICA,2018,37(5):54-66.
APA Zhang Libin.,Feng Qiming.,Sun Lina.,Fang Yan.,Xu Dongxue.,...&Yang Hongsheng.(2018).Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions.ACTA OCEANOLOGICA SINICA,37(5),54-66.
MLA Zhang Libin,et al."Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions".ACTA OCEANOLOGICA SINICA 37.5(2018):54-66.
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