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Comparative study on mitogenomes of green tide algae
Cai, Chuner1,2,3; Liu, Feng4,5; Jiang, Ting1; Wang, Lingke1; Jia, Rui1; Zhou, Lingjie6; Gu, Kai1; Ren, Jianfeng7; He, Peimin1,2
2018-12-01
Source PublicationGENETICA
ISSN0016-6707
Volume146Issue:6Pages:529-540
Corresponding AuthorHe, Peimin(pmhe@shou.edu.cn)
AbstractSince 2007, the annual green tide disaster in the Yellow Sea has brought serious economic losses to China. There is no research on the genetic similarities of four constituent species of green tide algae at the genomic level. We previously determined the mitochondrial genomes of Ulva prolifera, Ulva linza and Ulva flexuosa. In the present work, the mitochondrial genome of another green tide (Ulva compressa) was sequenced and analyzed. With the length of 62,311bp, it contained 29 encoding genes, 26 tRNAs and 10 open reading frames. By comparing these four mitochondrial genomes, we found that U. compressa was quite different from the other three types of Ulva species. However, there were similarities between U. prolifera and U. linza in the number, distribution and homology of open reading frames, evolutionary and codon variation of tRNA, evolutionary relationship and selection pressure of coding genes. Repetitive sequence analysis of simple sequence repeats, tandem repeat and forward repeats further supposed that they have evolved from the same origin. In addition, we directly analyzed gene homologies and translocation of four green tide algae by Mauve alignment. There were gene order rearrangements among them. With fast-evolving genomes, these four green algal mitochondria have both conservatism and variation, thus opening another window for the understanding of origin and evolution of Ulva.
KeywordUlvaceae Chlorophyta Gene order rearrangement Aquaculture Ulva compressa Open reading frame Encoding gene
DOI10.1007/s10709-018-0046-7
Indexed BySCI
Language英语
Funding ProjectShanghai Natural Science Fund[18ZR1417400] ; National Natural Science Foundation of China[41576163] ; National Key R&D Program of China[2016YFC1402105] ; Key Laboratory of Integrated Marine Monitoring and Applied Technologies for Harmful Algal Blooms, S.O.A.[MATHAB2017010]
WOS Research AreaGenetics & Heredity
WOS SubjectGenetics & Heredity
WOS IDWOS:000450104200008
PublisherSPRINGER
Citation statistics
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/156376
Collection实验海洋生物学重点实验室
Corresponding AuthorHe, Peimin
Affiliation1.Shanghai Ocean Univ, Coll Marine Ecol & Environm, Shanghai, Peoples R China
2.Shanghai Ocean Univ, Natl Demonstrat Ctr Expt Fisheries Sci Educ, Shanghai, Peoples R China
3.Naval Med Univ, Marine Biomed Inst, Shanghai, Peoples R China
4.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao, Peoples R China
5.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China
6.Univ Connecticut, Dept Marine Sci, Groton, CT 06340 USA
7.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China
Recommended Citation
GB/T 7714
Cai, Chuner,Liu, Feng,Jiang, Ting,et al. Comparative study on mitogenomes of green tide algae[J]. GENETICA,2018,146(6):529-540.
APA Cai, Chuner.,Liu, Feng.,Jiang, Ting.,Wang, Lingke.,Jia, Rui.,...&He, Peimin.(2018).Comparative study on mitogenomes of green tide algae.GENETICA,146(6),529-540.
MLA Cai, Chuner,et al."Comparative study on mitogenomes of green tide algae".GENETICA 146.6(2018):529-540.
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