Institutional Repository of Key Laboratory of Marine Ecology & Environmental Sciences, CAS
| De Novo assembly and comparative transcriptome analyses of purple and green morphs of Apostichopus japonicus during body wall pigmentation process | |
Xing, Lili1,2,3 ; Sun, Lina1,2; Liu, Shilin1,2; Li, Xiaoni1,2,3; Zhang, Libin1,2; Yang, Hongsheng1,2
| |
| 2018-12-01 | |
| 发表期刊 | COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS
 |
| ISSN | 1744-117X |
| 卷号 | 28页码:151-161 |
| 通讯作者 | Sun, Lina(sunlina@qdio.ac.cn) ; Yang, Hongsheng(hshyang@ms.qdio.ac.cn) |
| 摘要 | Pigmentation processes provide a traceable and relevant trait for understanding key issues in evolutionary biology such as adaptation, speciation and the maintenance of balanced polymorphisms. The sea cucumber Apostichopus japonicus, which has nutritive and medical properties, is considered the most valuable commercial species in many parts of Asia. Compared with the green morph, the purple morph is rare and has great appeal to consumers. However, little is currently known about the molecular mechanism of body color formation in A. japonicus, even in echinoderm. Here, we employ illumina sequencing to examine expression patterns of the gene network underlying body wall development in purple and green morphs of A. japonicus. Overall, the number of down-regulated genes in the green morph was significantly more than in the purple morph during the pigmentation stage. We observed dynamic expression patterns of a large number of pigment, regulation and growth genes from the "Melanogenesis", "Melanoma", "Wnt signaling pathway", "Notch signaling pathway", "epithelium development", "epidermal growth factor receptor binding","growth factor activity" and "growth", including contrasting expression patterns of these genes in green and purple morph. This study provides comprehensive lists of differentially expressed genes during body wall development in the green and purple morphs, revealing potential candidate genes that may be involved in regulating body color formation and polymorphism. These data will provide valuable information for future genetic studies on sea cucumbers elucidating the molecular mechanisms underlying pigmentation, and may support the culture of desirable color morphs. |
| DOI | 10.1016/j.cbd.2018.09.001 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | Agricultural Seed Project of Shandong Province[2016LZGC032] ; Qingdao Applied Basic Research Program[17-1-1-49-JCH] ; Open Research Fund Program of Guangxi Key Laboratory of Marine Biotechnology[GLMBT-201605] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA11020703] ; Taishan Scholars Program (Distinguished Taishan Scholars) ; Agricultural Seed Project of Shandong Province[2016LZGC032] ; Qingdao Applied Basic Research Program[17-1-1-49-JCH] ; Open Research Fund Program of Guangxi Key Laboratory of Marine Biotechnology[GLMBT-201605] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA11020703] ; Taishan Scholars Program (Distinguished Taishan Scholars) |
| WOS研究方向 | Biochemistry & Molecular Biology ; Genetics & Heredity |
| WOS类目 | Biochemistry & Molecular Biology ; Genetics & Heredity |
| WOS记录号 | WOS:000452567900016 |
| 出版者 | ELSEVIER SCIENCE INC |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/155802 |
| 专题 | 海洋生态与环境科学重点实验室 |
| 通讯作者 | Sun, Lina; Yang, Hongsheng |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Shandong, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| 第一作者单位 | 中国科学院海洋研究所 |
| 通讯作者单位 | 中国科学院海洋研究所 |
| 推荐引用方式 GB/T 7714 | Xing, Lili,Sun, Lina,Liu, Shilin,et al. De Novo assembly and comparative transcriptome analyses of purple and green morphs of Apostichopus japonicus during body wall pigmentation process[J]. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,2018,28:151-161. |
| APA | Xing, Lili,Sun, Lina,Liu, Shilin,Li, Xiaoni,Zhang, Libin,&Yang, Hongsheng.(2018).De Novo assembly and comparative transcriptome analyses of purple and green morphs of Apostichopus japonicus during body wall pigmentation process.COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,28,151-161. |
| MLA | Xing, Lili,et al."De Novo assembly and comparative transcriptome analyses of purple and green morphs of Apostichopus japonicus during body wall pigmentation process".COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 28(2018):151-161. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| De Novo assembly and（2910KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。
修改评论