IOCAS-IR  > 海洋生态与环境科学重点实验室
Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing
Song, Hao1,2,4; Yang, Meijie1,2,3; Yu, Zhenglin1,2,3; Zhang, Tao1,2,4
2019-04-01
Source PublicationMARINE GENOMICS
ISSN1874-7787
Volume44Pages:74-77
Corresponding AuthorZhang, Tao(tzhang@qdio.ac.cn)
AbstractThe veined rapa whelk (Rapana venosa) is an important commercial gastropod in China but is also an important invasive pest worldwide. Lack of genome information restricts investigation of this species. Here we report the first full-length transcriptome database derived from six different developmental stages of the whelk obtained using the PacBio Iso-Seq. As a result, 88,162 high-quality and full-length unigenes were obtained with average length of 2895 bp, among which 70,496 unigenes were successfully annotated, and 192,951 CDS regions, 1182 transcription factors, 284,387 microsatellite loci, and 27,222 lncRNAs were indentified. This study provides a valuable resource for characterizing the R. venosa transcriptome and for future analyses of gene expression profiles.
KeywordIso-Seq Transcriptome Gastropod Rapana venosa
DOI10.1016/j.margen.2018.10.002
Indexed BySCI
Language英语
Funding ProjectNational Natural Science Foundation of China[31572636] ; earmarked fund for Modern Agro-industry Technology Research System[CARS-49] ; industry leading talents project of Taishan scholars ; project of blue industry leading talent team of Yantai double hundred plan ; Primary Research & Development Plan of Shandong Province[2016ZDJS06A02] ; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology[LMEES-CTSP-2018-1] ; China Scholarship Council
WOS Research AreaGenetics & Heredity ; Marine & Freshwater Biology
WOS SubjectGenetics & Heredity ; Marine & Freshwater Biology
WOS IDWOS:000462800700011
PublisherELSEVIER SCIENCE BV
Citation statistics
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/154948
Collection海洋生态与环境科学重点实验室
Corresponding AuthorZhang, Tao
Affiliation1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Shandong, Peoples R China
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Corresponding Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Song, Hao,Yang, Meijie,Yu, Zhenglin,et al. Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing[J]. MARINE GENOMICS,2019,44:74-77.
APA Song, Hao,Yang, Meijie,Yu, Zhenglin,&Zhang, Tao.(2019).Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing.MARINE GENOMICS,44,74-77.
MLA Song, Hao,et al."Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing".MARINE GENOMICS 44(2019):74-77.
Files in This Item:
There are no files associated with this item.
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Song, Hao]'s Articles
[Yang, Meijie]'s Articles
[Yu, Zhenglin]'s Articles
Baidu academic
Similar articles in Baidu academic
[Song, Hao]'s Articles
[Yang, Meijie]'s Articles
[Yu, Zhenglin]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Song, Hao]'s Articles
[Yang, Meijie]'s Articles
[Yu, Zhenglin]'s Articles
Terms of Use
No data!
Social Bookmark/Share
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.