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Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)
Sun,Xue1; Wu,Jun2; Wang,Guangce3; Kang,Yani1,2; Ooi,Hong Sain4; Shen,Tingting2; Wang,Fangjun1; Yang,Rui1; Xu,Nianjun1; Zhao,Xiaodong2
2018-05-25
Source PublicationBMC Plant Biology
ISSN1471-2229
Volume18Issue:1
AbstractAbstractBackgroundRed algae are economically valuable for food and in industry. However, their genomic information is limited, and the genomic data of only a few species of red algae have been sequenced and deposited recently. In this study, we annotated a draft genome of the macroalga Gracilariopsis lemaneiformis (Gracilariales, Rhodophyta).ResultsThe entire 88.98?Mb genome of Gp. lemaneiformis 981 was generated from 13,825 scaffolds (≥500 bp) with an N50 length of 30,590?bp, accounting for approximately 91% of this algal genome. A total of 38.73?Mb of scaffold sequences were repetitive, and 9281 protein-coding genes were predicted. A phylogenomic analysis of 20 genomes revealed the relationship among the Chromalveolata, Rhodophyta, Chlorophyta and higher plants. Homology analysis indicated phylogenetic proximity between Gp. lemaneiformis and Chondrus crispus. The number of enzymes related to the metabolism of carbohydrates, including agar, glycoside hydrolases, glycosyltransferases, was abundant. In addition, signaling pathways associated with phytohormones such as auxin, salicylic acid and jasmonates are reported for the first time for this alga.ConclusionWe sequenced and analyzed a draft genome of the red alga Gp. lemaneiformis, and revealed its carbohydrate metabolism and phytohormone signaling characteristics. This work will be helpful in research on the functional and comparative genomics of the order Gracilariales and will enrich the genomic information on marine algae.
KeywordGracilariopsis lemaneiformis Genomic analysis Carbohydrate metabolism Phytohormone signaling
DOI10.1186/s12870-018-1309-2
Language英语
WOS IDBMC:10.1186/s12870-018-1309-2
PublisherBioMed Central
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Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/154561
Collection中国科学院海洋研究所
Corresponding AuthorXu,Nianjun; Zhao,Xiaodong
Affiliation1.
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Recommended Citation
GB/T 7714
Sun,Xue,Wu,Jun,Wang,Guangce,et al. Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)[J]. BMC Plant Biology,2018,18(1).
APA Sun,Xue.,Wu,Jun.,Wang,Guangce.,Kang,Yani.,Ooi,Hong Sain.,...&Zhao,Xiaodong.(2018).Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta).BMC Plant Biology,18(1).
MLA Sun,Xue,et al."Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)".BMC Plant Biology 18.1(2018).
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