IOCAS-IR  > 海洋生态与环境科学重点实验室
STRUCTURESELECTOR: A web-based software to select and visualize the optimal number of clusters using multiple methods
Li, Yu-Long1,2; Liu, Jin-Xian1,2
2018
发表期刊MOLECULAR ECOLOGY RESOURCES
卷号18期号:1页码:176-177
文章类型Article
摘要Inferences of population genetic structure are of great importance to the fields of ecology and evolutionary biology. The program structure has been widely used to infer population genetic structure. However, previous studies demonstrated that uneven sampling often leads to wrong inferences on hierarchical structure. The most widely used Delta K method tends to identify the uppermost hierarchy of population structure. Recently, four alternative statistics (MEDMEDK, MEDMEAK, MAXMEDK and MAXMEAK) were proposed, which appear to be more accurate than the previously used methods for both even and uneven sampling data. However, the lack of easy-to-use software limits the use of these appealing new estimators. Here, we developed a web-based user-friendly software STRUCTURESELECTOR to calculate the four appealing alternative statistics together with the commonly used Ln Pr(X vertical bar K) and Delta K statistics. STRUCTURESELECTOR accepts the result files of STRUCTURE, ADMIXTURE or FASTSTRUCTURE as input files. It reports the ''best'' K for each estimator, and the results are available as HTML or tab separated tables. The program can also generate graphical representations for specific K, which can be easily downloaded from the server. The software is freely available at http://lmme.qdio.ac.cn/StructureSelector/.
关键词Best k Clustering Population Genetic Structure Puechmaille Method Visualization
DOI10.1111/1755-0998.12719
收录类别SCI
语种英语
WOS记录号WOS:000424112000017
引用统计
被引频次:1[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
版本出版稿
条目标识符http://ir.qdio.ac.cn/handle/337002/154345
专题海洋生态与环境科学重点实验室
作者单位1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Shandong, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China
推荐引用方式
GB/T 7714
Li, Yu-Long,Liu, Jin-Xian. STRUCTURESELECTOR: A web-based software to select and visualize the optimal number of clusters using multiple methods[J]. MOLECULAR ECOLOGY RESOURCES,2018,18(1):176-177.
APA Li, Yu-Long,&Liu, Jin-Xian.(2018).STRUCTURESELECTOR: A web-based software to select and visualize the optimal number of clusters using multiple methods.MOLECULAR ECOLOGY RESOURCES,18(1),176-177.
MLA Li, Yu-Long,et al."STRUCTURESELECTOR: A web-based software to select and visualize the optimal number of clusters using multiple methods".MOLECULAR ECOLOGY RESOURCES 18.1(2018):176-177.
条目包含的文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可
STRUCTURESELECTOR_ A(101KB)期刊论文出版稿开放获取CC BY-NC-SA浏览 请求全文
个性服务
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Li, Yu-Long]的文章
[Liu, Jin-Xian]的文章
百度学术
百度学术中相似的文章
[Li, Yu-Long]的文章
[Liu, Jin-Xian]的文章
必应学术
必应学术中相似的文章
[Li, Yu-Long]的文章
[Liu, Jin-Xian]的文章
相关权益政策
暂无数据
收藏/分享
文件名: STRUCTURESELECTOR_ A web-based software to select and visualize the optimal number of clusters using multiple methods.pdf
格式: Adobe PDF
所有评论 (0)
暂无评论
 

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。