Institutional Repository of Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
| Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent | |
Zhang, Jian1,2,4; Sun, Qing-lei1,2 ; Luan, Zhen-dong2,3,4; Lian, Chao3; Sun, Li1,2
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| 2017-05-17 | |
| 发表期刊 | SCIENTIFIC REPORTS
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| 卷号 | 7 |
| 文章类型 | Article |
| 摘要 | Shrimp of the family Alvinocarididae are the predominant megafauna of deep-sea hydrothermal vents. However, genome information on this family is currently unavailable. In the present study, by employing Illumina sequencing, we performed the first de novo transcriptome analysis of the gills of the shrimp Rimicaris sp. from the hydrothermal vent in Desmos, Manus Basin. The analysis was conducted in a comparative manner with the shrimp taken directly from the vent (GR samples) and the shrimp that had been maintained for ten days under normal laboratory condition (mGR samples). Among the 128,938 unigenes identified, a large number of differentially expressed genes (DEGs) between the GR and mGR samples were detected, including 2365 and 1607 genes significantly upregulated and downregulated, respectively, in GR. The DEGs covered diverse functional categories. Most of the DEGs associated with immunity were downregulated in GR, while most of the DEGs associated with sulfur metabolism and detoxification were upregulated in GR. These results provide the first comprehensive transcriptomic resource for hydrothermal vent Rimicaris and revealed varied categories of genes likely involved in deep-sea survival. |
| DOI | 10.1038/s41598-017-02073-9 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000401511100007 |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 版本 | 出版稿 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/136862 |
| 专题 | 实验海洋生物学重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Key Lab Marine Geol & Environm, Qingdao 266071, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Deep Sea Res Ctr, Qingdao 266071, Peoples R China |
| 第一作者单位 | 实验海洋生物学重点实验室; 中国科学院海洋研究所 |
| 推荐引用方式 GB/T 7714 | Zhang, Jian,Sun, Qing-lei,Luan, Zhen-dong,et al. Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent[J]. SCIENTIFIC REPORTS,2017,7. |
| APA | Zhang, Jian,Sun, Qing-lei,Luan, Zhen-dong,Lian, Chao,&Sun, Li.(2017).Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent.SCIENTIFIC REPORTS,7. |
| MLA | Zhang, Jian,et al."Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent".SCIENTIFIC REPORTS 7(2017). |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Comparative transcri（4896KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
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