IOCAS-IR  > 海洋生态与环境科学重点实验室
The complete genome of hydrocarbon-degrading Pseudoalteromonas sp NJ289 and its phylogenetic relationship
Liu Fangming1,2,3; Wang Yibin3; Qu Changfeng3; Zheng Zhou3; Miao Jinlai3; Xu Hua4; Xiao Tian1
2017-02-01
Source PublicationACTA OCEANOLOGICA SINICA
Volume36Issue:2Pages:88-93
SubtypeArticle
AbstractGenus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencing platform. The assembly yielded three contigs representing two chromosomes and one plasmid with the sizes of 3.2 Mb, 636 kb and 1.8 kb, respectively. The G+C contents of genome were 40.83% and included 3 589 ORFs. Functional annotation indicated some potential roles in enzymatic activity and environmental adaptability. This study may help for understanding the population diverse, evolutionary ecology and the microbial interaction.
KeywordPseudoalteromonas Low Temperature Environmental Adaptability Sequencing Phylogenetic Tree
DOI10.1007/s13131-017-0979-1
Indexed BySCI
Language英语
WOS IDWOS:000393672200011
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Document Type期刊论文
Version出版稿
Identifierhttp://ir.qdio.ac.cn/handle/337002/136372
Collection海洋生态与环境科学重点实验室
Affiliation1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
3.State Ocean Adm, Inst Oceanog 1, Qingdao 266061, Peoples R China
4.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Minist Agr, Key Lab Sustainable Dev Marine Fisheries, Qingdao 266071, Peoples R China
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Liu Fangming,Wang Yibin,Qu Changfeng,et al. The complete genome of hydrocarbon-degrading Pseudoalteromonas sp NJ289 and its phylogenetic relationship[J]. ACTA OCEANOLOGICA SINICA,2017,36(2):88-93.
APA Liu Fangming.,Wang Yibin.,Qu Changfeng.,Zheng Zhou.,Miao Jinlai.,...&Xiao Tian.(2017).The complete genome of hydrocarbon-degrading Pseudoalteromonas sp NJ289 and its phylogenetic relationship.ACTA OCEANOLOGICA SINICA,36(2),88-93.
MLA Liu Fangming,et al."The complete genome of hydrocarbon-degrading Pseudoalteromonas sp NJ289 and its phylogenetic relationship".ACTA OCEANOLOGICA SINICA 36.2(2017):88-93.
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