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Environmental filtering decreases with fish development for the assembly of gut microbiota
Yan, Qingyun1,2; Li, Jinjin1,2,3; Yu, Yuhe1,2; Wang, Jianjun4,5,6; He, Zhili4,5; Van Nostrand, Joy D.4,5; Kempher, Megan L.4,5; Wu, Liyou4,5; Wang, Yaping1,2; Liao, Lanjie1,2; Li, Xinghao1,2,7; Wu, Shu1,2; Ni, Jiajia1,2,8; Wang, Chun1,2,7,9; Zhou, Jizhong4,5,10,11
2016-12-01
Source PublicationENVIRONMENTAL MICROBIOLOGY
Volume18Issue:12Pages:4739-4754
SubtypeArticle
AbstractGut microbiota typically occupy habitats with definable limits/borders that are comparable to oceanic islands. The gut therefore can be regarded as an 'island' for the assembly of microbial communities within the 'sea' of surrounding environments. This study aims to reveal the ecological mechanisms that govern microbiota in the fish gut 'island' ecosystem. Taxonomic compositions, phylogenetic diversity, and community turnover across host development were analyzed via the high-throughput sequencing of 16S rRNA gene amplicons. The results indicate that the Shannon diversity of gut microbiota in the three examined freshwater fish species all significantly decreased with host development, and the dominant bacterial taxa also changed significantly during host development. Null model and phylogenetic-based mean nearest taxon distance (MNTD) analyses suggest that host gut environmental filtering led to the assembly of microbial communities in the fish gut 'island'. However, the phylogenetic clustering of local communities and deterministic processes that governed community turnover became less distinct as the fish developed. The observed mechanisms that shaped fish gut microbiota seemed to be mainly shaped by the gut environment and by some other selective changes accompanying the host development process. These findings greatly enhance our understanding of stage-specific community assembly patterns in the fish gut ecosystem.
DOI10.1111/1462-2920.13365
Indexed BySCI
Language英语
WOS IDWOS:000392946900034
Citation statistics
Document Type期刊论文
Version出版稿
Identifierhttp://ir.qdio.ac.cn/handle/337002/136298
Collection海洋生态与环境科学重点实验室
实验海洋生物学重点实验室
Affiliation1.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China
2.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan 430072, Peoples R China
3.Qilu Normal Univ, Jinan 250013, Peoples R China
4.Univ Oklahoma, Inst Environm Genom, Norman, OK 73019 USA
5.Univ Oklahoma, Dept Microbiol & Plant Biol, Norman, OK 73019 USA
6.Chinese Acad Sci, State Key Lab Lake Sci & Environm, Nanjing Inst Geog & Limnol, Nanjing 210008, Peoples R China
7.Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China
8.Guangdong Inst Microbiol, State Key Lab Appl Microbiol Southern China, Guangzhou 510070, Guangdong, Peoples R China
9.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China
10.Tsinghua Univ, State Key Joint Lab Environm Simulat & Pollut Con, Sch Environm, Beijing 100084, Peoples R China
11.Lawrence Berkeley Natl Lab, Div Earth Sci, Berkeley, CA 94720 USA
Recommended Citation
GB/T 7714
Yan, Qingyun,Li, Jinjin,Yu, Yuhe,et al. Environmental filtering decreases with fish development for the assembly of gut microbiota[J]. ENVIRONMENTAL MICROBIOLOGY,2016,18(12):4739-4754.
APA Yan, Qingyun.,Li, Jinjin.,Yu, Yuhe.,Wang, Jianjun.,He, Zhili.,...&Zhou, Jizhong.(2016).Environmental filtering decreases with fish development for the assembly of gut microbiota.ENVIRONMENTAL MICROBIOLOGY,18(12),4739-4754.
MLA Yan, Qingyun,et al."Environmental filtering decreases with fish development for the assembly of gut microbiota".ENVIRONMENTAL MICROBIOLOGY 18.12(2016):4739-4754.
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