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Complete mitochondrial genome of the brown alga Colpomenia peregrina (Scytosiphonaceae, Phaeophyceae): genome characterization and comparative analyses
Liu, Feng; Pang, Shaojun; Li, Jing; Li, Xia
2016
Source PublicationMITOCHONDRIAL DNA
Volume27Issue:3Pages:1601-1603
SubtypeArticle
AbstractColpomenia peregrina Sauvageau has a biphasic, heteromorphic life history alternated with saccate gametophytes and crustose sporophytes. The circular C. peregrina mitogenome is 36,025 bp in length and encodes 66 genes, including 3 ribosomal RNA genes (rRNA), 25 transfer RNA genes (tRNA), 35 protein-coding genes, and 3 open reading frames (ORFs). It is the shortest and most compact of the sequenced Ectocarpales mitogenomes to date. The overall A + T content in C. peregrina mitogenome is 68.01%, higher than that of other reported Ectocarpales species (62.01-66.49%). The total intergenic spacers are 1499 bp, constituting 4.16% of the whole genome. Genome organization of C. peregrina is essentially identical to that of known Ectocarpales species, except for Pylaiella littoralis. Phylogenetic analyses based on 35 protein-coding genes show that Scytosiphon lomentaria and Petalonia fascia firstly cluster together, and then group with C. peregrina forming the Scytosiphon-Petalonia-Colpomenia subclade with high support values, indicating their close evolutionary relationships.
KeywordBrown Alga Colpomenia Peregrina Mitochondrial Genome Phaeophyceae Scytosiphonaceae
DOI10.3109/19401736.2014.958688
Indexed BySCI
Language英语
WOS IDWOS:000377538000014
Citation statistics
Cited Times:2[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Version出版稿
Identifierhttp://ir.qdio.ac.cn/handle/337002/130980
Collection实验海洋生物学重点实验室
AffiliationChinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, 7 Nanhai Rd, Qingdao 266071, Peoples R China
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Liu, Feng,Pang, Shaojun,Li, Jing,et al. Complete mitochondrial genome of the brown alga Colpomenia peregrina (Scytosiphonaceae, Phaeophyceae): genome characterization and comparative analyses[J]. MITOCHONDRIAL DNA,2016,27(3):1601-1603.
APA Liu, Feng,Pang, Shaojun,Li, Jing,&Li, Xia.(2016).Complete mitochondrial genome of the brown alga Colpomenia peregrina (Scytosiphonaceae, Phaeophyceae): genome characterization and comparative analyses.MITOCHONDRIAL DNA,27(3),1601-1603.
MLA Liu, Feng,et al."Complete mitochondrial genome of the brown alga Colpomenia peregrina (Scytosiphonaceae, Phaeophyceae): genome characterization and comparative analyses".MITOCHONDRIAL DNA 27.3(2016):1601-1603.
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