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Transcriptomic Analysis of Differentially Expressed Genes During Larval Development of Rapana venosa by Digital Gene Expression Profiling
Song, Hao1,2; Yu, Zheng-Lin1,2; Sun, Li-Na1; Xue, Dong-Xiu1; Zhang, Tao1; Wang, Hai-Yan1
2016-07-01
发表期刊G3-GENES GENOMES GENETICS
卷号6期号:7页码:2181-2193
文章类型Article
摘要During the life cycle of shellfish, larval development, especially metamorphosis, has a vital influence on the dynamics, distribution, and recruitment of natural populations, as well as seed breeding. Rapana venosa, a carnivorous gastropod, is an important commercial shellfish in China, and is an ecological invader in the United States, Argentina, and France. However, information about the mechanism of its early development is still limited, because research in this area has long suffered from a lack of genomic resources. In this study, 15 digital gene expression (DGE) libraries from five developmental stages of R. venosa were constructed and sequenced on the IIIumina Hi-Sequation 2500 platform. Bioinformatics-analysis identified numerous differentially and specifically expressed genes, which revealed that genes associated with growth, nervous system, digestive system, immune system, and apoptosis participate in important developmental processes. The functional analysis of differentially expressed genes was further implemented by gene ontology, and Kyoto encyclopedia of genes and genomes enrichment. DGE profiling provided a general picture of the transcriptomic activities during the early development of R. venosa, which may provide interesting hints for further study. Our data represent the first comparative transcriptomic information available for the early development of R. venosa, which is a prerequisite for a better understanding of the physiological traits controlling development.
关键词Transcriptome Rapana Venosa Gastropod Larva Digital Gene Expression
DOI10.1534/g3.116.029314
收录类别SCI
语种英语
WOS记录号WOS:000379590200038
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文献类型期刊论文
版本出版稿
条目标识符http://ir.qdio.ac.cn/handle/337002/130958
专题海洋生态与环境科学重点实验室
作者单位1.Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, 7 Nanhai Rd, Qingdao 266071, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
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Song, Hao,Yu, Zheng-Lin,Sun, Li-Na,et al. Transcriptomic Analysis of Differentially Expressed Genes During Larval Development of Rapana venosa by Digital Gene Expression Profiling[J]. G3-GENES GENOMES GENETICS,2016,6(7):2181-2193.
APA Song, Hao,Yu, Zheng-Lin,Sun, Li-Na,Xue, Dong-Xiu,Zhang, Tao,&Wang, Hai-Yan.(2016).Transcriptomic Analysis of Differentially Expressed Genes During Larval Development of Rapana venosa by Digital Gene Expression Profiling.G3-GENES GENOMES GENETICS,6(7),2181-2193.
MLA Song, Hao,et al."Transcriptomic Analysis of Differentially Expressed Genes During Larval Development of Rapana venosa by Digital Gene Expression Profiling".G3-GENES GENOMES GENETICS 6.7(2016):2181-2193.
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