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Description of Domibacillus iocasae sp nov., isolated from deep-sea sediment, and emended description of the genus Domibacillus
Sun, Qing-Lei1,2,3; Sun, Li1,2
2016-02-01
Source PublicationINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Volume66Pages:982-987
SubtypeArticle
AbstractIn this study, we report a novel Gram-stain-positive bacterium, designated strain S6(T), isolated from deep-sea sediment in Okinawa Trough. Growth of strain S6(T) occurred at 10-45 degrees C (optimum, 35 degrees C), at pH 6.0-11.0 (optimum, 8.0) and with 0-8 % (w/v) NaCl (optimum, 3 %). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain S6(T) belonged to the genus Domibacillus. The closest phylogenetic neighbours of strain S6(T) were Domibacillus robiginosus WS 4628(T) (=DSM 25058(T)) (98.6 % 16S rRNA gene sequence similarity), D. indicus SD111(T) (=DSM 28032(T)) (97.6 %), D. enclensis NIO-1016(T) (=DSM 25145(T)) (97.6 %), and 'D. tundrae' PAMC 80007 (=DSM 29572) (97.6 %). Levels of similarity between strain S6(T) and other close relatives were below 96 %. The levels of DNA-DNA relatedness between strain S6(T) and its closest relatives in the genus Domibacillus were well below 70 %. The genomic DNA G+C content of strain S6(T) was 44.4 mol%. The major menaquinone was MK-6. The polar lipids of strain S6(T) contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine and three unknown phospholipids. Strain S6(T) harboured meso-diaminopimelic acid as the diagnostic diamino acid and an A1 gamma type of peptidoglycan. The major cell-wall sugars of strain S6(T) were xylose and glucose. Phylogenetic, physiological, biochemical and morphological analyses suggest that this strain represents a novel species of the genus Domibacillus, for which the name Domibacillus iocasae sp. nov. is proposed. The type strain is S6(T) (=DSM 29979(T)=CCTCC AB 2015183(T)). An emended description of the genus Domibacillus is also provided.
DOI10.1099/ijsem.0.000823
Indexed BySCI
Language英语
WOS IDWOS:000372335600068
Citation statistics
Cited Times:7[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Version出版稿
Identifierhttp://ir.qdio.ac.cn/handle/337002/126255
Collection实验海洋生物学重点实验室
Affiliation1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China
3.Univ Chinese Acad Sci, Beijing, Peoples R China
First Author AffilicationInstitute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Sun, Qing-Lei,Sun, Li. Description of Domibacillus iocasae sp nov., isolated from deep-sea sediment, and emended description of the genus Domibacillus[J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,2016,66:982-987.
APA Sun, Qing-Lei,&Sun, Li.(2016).Description of Domibacillus iocasae sp nov., isolated from deep-sea sediment, and emended description of the genus Domibacillus.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,66,982-987.
MLA Sun, Qing-Lei,et al."Description of Domibacillus iocasae sp nov., isolated from deep-sea sediment, and emended description of the genus Domibacillus".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66(2016):982-987.
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