IOCAS-IR  > 实验海洋生物学重点实验室
Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae
Liu, Feng1,2; Pang, Shaojun1
2016-04-01
Source PublicationJOURNAL OF APPLIED PHYCOLOGY
Volume28Issue:2Pages:1419-1426
SubtypeArticle
AbstractSargassum horneri (Turner) C. Agardh is an important canopy-forming seaweed native to the northwestern Pacific coast growing in the upper sublittoral zone. In this study, the chloroplast genome of S. horneri was fully sequenced and compared with three other brown algal chloroplast genomes. The S. horneri chloroplast genome is 124,068 bp in size with an inverted repeat of 5436 bp and is slightly smaller than the other three brown algal chloroplast DNAs (cpDNAs). It contains 173 genes, including 6 ribosomal RNA (rRNA) genes, 28 transfer RNA (tRNA) genes, and 139 protein-coding genes (PCGs). The coding sequence constitutes 86.32 % of the S. horneri cpDNA. The total spacer size was found to be reduced to 16,967 bp with an average length of 101.0 bp, which makes the S. horneri cpDNA more compact than the other three brown algal cpDNAs. Sixteen small inverted and nine tandem repeats were detected in S. horneri chloroplast genomes. Two introns in trnL2 and trnW genes were identified with the size of 209 and 90 bp, respectively. Its gene content and order are identical to those of Fucus vesiculosus cpDNA, indicating that the chloroplast genome organization at the level of the order Fucales is highly conserved.
KeywordSargassum Horneri Chloroplast Genome Brown Alga Phaeophyceae Sargassaceae
DOI10.1007/s10811-015-0609-2
Indexed BySCI
Language英语
WOS IDWOS:000372256900070
Citation statistics
Document Type期刊论文
Identifierhttp://ir.qdio.ac.cn/handle/337002/126219
Collection实验海洋生物学重点实验室
Affiliation1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China
2.Huaihai Inst Technol, Key Lab Marine Biotechnol Jiangsu Prov, Lianyungang 222005, Peoples R China
First Author AffilicationKey Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
Recommended Citation
GB/T 7714
Liu, Feng,Pang, Shaojun. Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae[J]. JOURNAL OF APPLIED PHYCOLOGY,2016,28(2):1419-1426.
APA Liu, Feng,&Pang, Shaojun.(2016).Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae.JOURNAL OF APPLIED PHYCOLOGY,28(2),1419-1426.
MLA Liu, Feng,et al."Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae".JOURNAL OF APPLIED PHYCOLOGY 28.2(2016):1419-1426.
Files in This Item:
File Name/Size DocType Version Access License
Chloroplast genome o(627KB)期刊论文出版稿开放获取CC BY-NC-SAView Application Full Text
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Liu, Feng]'s Articles
[Pang, Shaojun]'s Articles
Baidu academic
Similar articles in Baidu academic
[Liu, Feng]'s Articles
[Pang, Shaojun]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Liu, Feng]'s Articles
[Pang, Shaojun]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: Chloroplast genome of Sargassum horneri.pdf
Format: Adobe PDF
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.